Results 1 - 20 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29944 | 3' | -57.3 | NC_006273.1 | + | 42743 | 1.1 | 0.002673 |
Target: 5'- aCGAGCCGCAUAGCGACGGCGAGCUACg -3' miRNA: 3'- -GCUCGGCGUAUCGCUGCCGCUCGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 151993 | 0.79 | 0.274664 |
Target: 5'- cCGGGCCGgGUGGCGGCGGC-AGCaGCc -3' miRNA: 3'- -GCUCGGCgUAUCGCUGCCGcUCGaUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 157371 | 0.77 | 0.389699 |
Target: 5'- gGGGCUGCGUcgccuGCGACGGCGGGUg-- -3' miRNA: 3'- gCUCGGCGUAu----CGCUGCCGCUCGaug -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 40005 | 0.77 | 0.389699 |
Target: 5'- gGAGuuGCGUguguggacGGCGACGGCGAcuaguugcguguGCUGCg -3' miRNA: 3'- gCUCggCGUA--------UCGCUGCCGCU------------CGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 67 | 0.77 | 0.389699 |
Target: 5'- gGAGuuGCGUguguggacGGCGACGGCGAcuaguugcguguGCUGCg -3' miRNA: 3'- gCUCggCGUA--------UCGCUGCCGCU------------CGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 234898 | 0.77 | 0.389699 |
Target: 5'- gGAGuuGCGUguguggacGGCGACGGCGAcuaguugcguguGCUGCg -3' miRNA: 3'- gCUCggCGUA--------UCGCUGCCGCU------------CGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 86690 | 0.77 | 0.389699 |
Target: 5'- aGAuGCCGCAUAgGCGACGGagGAGCUccaGCa -3' miRNA: 3'- gCU-CGGCGUAU-CGCUGCCg-CUCGA---UG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 99488 | 0.77 | 0.39295 |
Target: 5'- cCGAGUCGUcuucuugcgguaccgGUGGUGGCGGCGgcGGCUGCu -3' miRNA: 3'- -GCUCGGCG---------------UAUCGCUGCCGC--UCGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 47196 | 0.76 | 0.397859 |
Target: 5'- aCGAGCgGCAgagaAGCaGACGGCGAGCc-- -3' miRNA: 3'- -GCUCGgCGUa---UCG-CUGCCGCUCGaug -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 176620 | 0.76 | 0.397859 |
Target: 5'- gCGuGUuugCGCGUAGCGACGaGCaGAGCUGCa -3' miRNA: 3'- -GCuCG---GCGUAUCGCUGC-CG-CUCGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 39829 | 0.75 | 0.457922 |
Target: 5'- gGGGCUcaGCGUGuggcGCGGCGGCGAGCcGCu -3' miRNA: 3'- gCUCGG--CGUAU----CGCUGCCGCUCGaUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 163073 | 0.75 | 0.485109 |
Target: 5'- cCGAgGCgGC--GGCGACGGCGgcGGCUGCg -3' miRNA: 3'- -GCU-CGgCGuaUCGCUGCCGC--UCGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 165666 | 0.75 | 0.485109 |
Target: 5'- aGAGCCGCAauccgGGCGGCGGCacaucaAGuCUGCg -3' miRNA: 3'- gCUCGGCGUa----UCGCUGCCGc-----UC-GAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 93565 | 0.74 | 0.513043 |
Target: 5'- uGAGCCuggGCAacuugAGCGGCGGCGGcCUGCg -3' miRNA: 3'- gCUCGG---CGUa----UCGCUGCCGCUcGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 114487 | 0.73 | 0.558041 |
Target: 5'- gCGGGCCGCAaacgcaaaucagcaUccucGGCGACGGCGuGCacgGCg -3' miRNA: 3'- -GCUCGGCGU--------------A----UCGCUGCCGCuCGa--UG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 84054 | 0.73 | 0.570697 |
Target: 5'- uGAGCCGCGaAGCGGCgGGCgGAGUg-- -3' miRNA: 3'- gCUCGGCGUaUCGCUG-CCG-CUCGaug -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 92586 | 0.73 | 0.570697 |
Target: 5'- cCGuGCC-CAccAGCGACGGCG-GCUGCu -3' miRNA: 3'- -GCuCGGcGUa-UCGCUGCCGCuCGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 113499 | 0.73 | 0.570697 |
Target: 5'- gGAuGCCGUAgc-CGGCGGCGGGUUGCc -3' miRNA: 3'- gCU-CGGCGUaucGCUGCCGCUCGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 54923 | 0.73 | 0.570697 |
Target: 5'- gGGGUCG-AUAG-GGCGGUGGGCUGCa -3' miRNA: 3'- gCUCGGCgUAUCgCUGCCGCUCGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 122640 | 0.72 | 0.629785 |
Target: 5'- aGAGCUGCuguuGCGACGGCGAauGggACg -3' miRNA: 3'- gCUCGGCGuau-CGCUGCCGCU--CgaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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