Results 21 - 40 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29944 | 3' | -57.3 | NC_006273.1 | + | 122640 | 0.72 | 0.629785 |
Target: 5'- aGAGCUGCuguuGCGACGGCGAauGggACg -3' miRNA: 3'- gCUCGGCGuau-CGCUGCCGCU--CgaUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 115494 | 0.72 | 0.639679 |
Target: 5'- aGAGCCaGCGgcGCGGCGGCGAagaaaaucgGCcGCg -3' miRNA: 3'- gCUCGG-CGUauCGCUGCCGCU---------CGaUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 167255 | 0.72 | 0.639679 |
Target: 5'- uGGGCgGCGUGGUGACcguggcgguGGCGGGCaugACg -3' miRNA: 3'- gCUCGgCGUAUCGCUG---------CCGCUCGa--UG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 125194 | 0.72 | 0.648579 |
Target: 5'- -uGGCCGcCAUAGCGGCGGUGAaauccugGCcGCg -3' miRNA: 3'- gcUCGGC-GUAUCGCUGCCGCU-------CGaUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 80385 | 0.72 | 0.649567 |
Target: 5'- gGAGCgGCggccGUGGCGGCGGC-AGCgGCg -3' miRNA: 3'- gCUCGgCG----UAUCGCUGCCGcUCGaUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 162559 | 0.72 | 0.649567 |
Target: 5'- uGAGCCcccCGUAGCGcACGaGCGAGCagGCg -3' miRNA: 3'- gCUCGGc--GUAUCGC-UGC-CGCUCGa-UG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 204994 | 0.72 | 0.649567 |
Target: 5'- aGGGuUCGCcagAGCGACGuGaCGAGCUGCg -3' miRNA: 3'- gCUC-GGCGua-UCGCUGC-C-GCUCGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 167151 | 0.71 | 0.669297 |
Target: 5'- aCGGGCCGC-UGGaaguCGGCGGGCggggGCg -3' miRNA: 3'- -GCUCGGCGuAUCgcu-GCCGCUCGa---UG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 229543 | 0.71 | 0.669297 |
Target: 5'- aGGGCCGCcaauUGGCGgcgacagauGCGGCG-GUUACa -3' miRNA: 3'- gCUCGGCGu---AUCGC---------UGCCGCuCGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 1705 | 0.71 | 0.679123 |
Target: 5'- gCGcGCCGaggaGGCGACGGCgcucggacggGAGCUGCg -3' miRNA: 3'- -GCuCGGCgua-UCGCUGCCG----------CUCGAUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 111203 | 0.71 | 0.679123 |
Target: 5'- aCGAGCCaGaCGaGGCGGCGGCGguGGCguugGCa -3' miRNA: 3'- -GCUCGG-C-GUaUCGCUGCCGC--UCGa---UG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 213676 | 0.71 | 0.680104 |
Target: 5'- aGAGCCGCGccgacaaaggccugcGGCGACGGCuGGC-ACa -3' miRNA: 3'- gCUCGGCGUa--------------UCGCUGCCGcUCGaUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 102281 | 0.71 | 0.69866 |
Target: 5'- uGAGaaugaCGCGUGGCGGCGGUGAcagggGCaACg -3' miRNA: 3'- gCUCg----GCGUAUCGCUGCCGCU-----CGaUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 15419 | 0.71 | 0.708354 |
Target: 5'- aGAcGCCGCGUugcccgaugAGCGACGcgagcGCGAGCgGCg -3' miRNA: 3'- gCU-CGGCGUA---------UCGCUGC-----CGCUCGaUG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 145083 | 0.71 | 0.708354 |
Target: 5'- gCGAcGCCGC-UGGCGGCGGC--GCUGa -3' miRNA: 3'- -GCU-CGGCGuAUCGCUGCCGcuCGAUg -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 86876 | 0.71 | 0.708354 |
Target: 5'- gGuAGUCGCGUAGCGGCGGCugcccAGCg-- -3' miRNA: 3'- gC-UCGGCGUAUCGCUGCCGc----UCGaug -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 158231 | 0.71 | 0.708354 |
Target: 5'- gCGGGCgCGCGUcggccGGCGACGGCG-GUUcGCc -3' miRNA: 3'- -GCUCG-GCGUA-----UCGCUGCCGCuCGA-UG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 144312 | 0.71 | 0.708354 |
Target: 5'- -uGGCgGCGUugugcGCGGCGGUGGGCUGu -3' miRNA: 3'- gcUCGgCGUAu----CGCUGCCGCUCGAUg -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 232979 | 0.71 | 0.717987 |
Target: 5'- --cGCCGCGcGGCcucGGCGGCGGGCgccgACu -3' miRNA: 3'- gcuCGGCGUaUCG---CUGCCGCUCGa---UG- -5' |
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29944 | 3' | -57.3 | NC_006273.1 | + | 213926 | 0.71 | 0.717987 |
Target: 5'- uGAGCaCGCugagGGCGACGGUGgcgguaAGCUGg -3' miRNA: 3'- gCUCG-GCGua--UCGCUGCCGC------UCGAUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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