miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 3' -57.3 NC_006273.1 + 31452 0.66 0.91622
Target:  5'- gCGaAGCCGCcaugaGGCGGUG-GCUGCg -3'
miRNA:   3'- -GC-UCGGCGuaucgCUGCCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 147825 0.66 0.914534
Target:  5'- cCGAGCCGCggcuucacacguucGUGGUGcGCGGUGAccGuCUGCc -3'
miRNA:   3'- -GCUCGGCG--------------UAUCGC-UGCCGCU--C-GAUG- -5'
29944 3' -57.3 NC_006273.1 + 187191 0.66 0.910522
Target:  5'- uGGGCCgGCccucggGGUGcgggUGGCGGGCUGCg -3'
miRNA:   3'- gCUCGG-CGua----UCGCu---GCCGCUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 105168 0.66 0.910522
Target:  5'- gCGGcGCCGCggccucgcccagGUAGCcggaGACGGCG-GUUACg -3'
miRNA:   3'- -GCU-CGGCG------------UAUCG----CUGCCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 218188 0.66 0.910522
Target:  5'- --cGUCGCGUGGCaugGGCGGCG-GCcgACg -3'
miRNA:   3'- gcuCGGCGUAUCG---CUGCCGCuCGa-UG- -5'
29944 3' -57.3 NC_006273.1 + 47481 0.66 0.910522
Target:  5'- aGAGCaGgAgaaCGACGGCGAGCcGCg -3'
miRNA:   3'- gCUCGgCgUaucGCUGCCGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 164957 0.67 0.904603
Target:  5'- -aGGUgGCGUAGCaGCGGCGGGUc-- -3'
miRNA:   3'- gcUCGgCGUAUCGcUGCCGCUCGaug -5'
29944 3' -57.3 NC_006273.1 + 54946 0.67 0.904603
Target:  5'- -cAGUCGgGUGGUGGCGGCGguGGCg-- -3'
miRNA:   3'- gcUCGGCgUAUCGCUGCCGC--UCGaug -5'
29944 3' -57.3 NC_006273.1 + 64253 0.67 0.904603
Target:  5'- gCGGGCacggGCGUuGCGGCGGCGgccgaAGCggaugGCg -3'
miRNA:   3'- -GCUCGg---CGUAuCGCUGCCGC-----UCGa----UG- -5'
29944 3' -57.3 NC_006273.1 + 178683 0.67 0.904603
Target:  5'- aCGA-CCGCgGUGGCGGCGGUGGuuccGgUACg -3'
miRNA:   3'- -GCUcGGCG-UAUCGCUGCCGCU----CgAUG- -5'
29944 3' -57.3 NC_006273.1 + 133293 0.67 0.904603
Target:  5'- uCGGG-CGCA-AGCGGCGGUuuucuGCUACa -3'
miRNA:   3'- -GCUCgGCGUaUCGCUGCCGcu---CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 145604 0.67 0.904603
Target:  5'- gGGGCC-CG-AGCGACGGUcuGGGCgGCg -3'
miRNA:   3'- gCUCGGcGUaUCGCUGCCG--CUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 80028 0.67 0.903999
Target:  5'- aCGAGCgGCAacgUGGCGAa-GCGAccgcccgugagacGCUGCa -3'
miRNA:   3'- -GCUCGgCGU---AUCGCUgcCGCU-------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 72646 0.67 0.902785
Target:  5'- gCGGGCgucgaagcgcuuggCGCGUAGUagugcuagGcACGGCGAGCUGg -3'
miRNA:   3'- -GCUCG--------------GCGUAUCG--------C-UGCCGCUCGAUg -5'
29944 3' -57.3 NC_006273.1 + 133225 0.67 0.902785
Target:  5'- gGuGCuCGCcuaucaccuguacgGUGGCGACGGCGccacugccGCUGCg -3'
miRNA:   3'- gCuCG-GCG--------------UAUCGCUGCCGCu-------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 147247 0.67 0.898466
Target:  5'- aCGAGCUGCAUGaacACGGCGuAGC-ACa -3'
miRNA:   3'- -GCUCGGCGUAUcgcUGCCGC-UCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 165408 0.67 0.898466
Target:  5'- uGAGCUGCAUGGCGGgccauugGGUGGGggugaUACa -3'
miRNA:   3'- gCUCGGCGUAUCGCUg------CCGCUCg----AUG- -5'
29944 3' -57.3 NC_006273.1 + 120576 0.67 0.89784
Target:  5'- cCGGGCaagGCGUcuugccgguggcGGCGACGuuuggguugcgcaGCGGGCUGCc -3'
miRNA:   3'- -GCUCGg--CGUA------------UCGCUGC-------------CGCUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 1972 0.67 0.89784
Target:  5'- gGGGCCGgcgacggggacgaCGUcGCGccaGCGGCGAGCgGCa -3'
miRNA:   3'- gCUCGGC-------------GUAuCGC---UGCCGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 148868 0.67 0.892112
Target:  5'- --uGCCGCGUGaCGACGGCGAcGgUGa -3'
miRNA:   3'- gcuCGGCGUAUcGCUGCCGCU-CgAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.