miRNA display CGI


Results 41 - 60 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 3' -57.3 NC_006273.1 + 148868 0.67 0.892112
Target:  5'- --uGCCGCGUGaCGACGGCGAcGgUGa -3'
miRNA:   3'- gcuCGGCGUAUcGCUGCCGCU-CgAUg -5'
29944 3' -57.3 NC_006273.1 + 188650 0.67 0.890164
Target:  5'- aGcAGCCGCGUcuuaAGCGgcuccgaguacagcACGuCGAGCUGCg -3'
miRNA:   3'- gC-UCGGCGUA----UCGC--------------UGCcGCUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 233526 0.67 0.885545
Target:  5'- -cGGCCGUAgcAGCGACG-CGGGgUGCg -3'
miRNA:   3'- gcUCGGCGUa-UCGCUGCcGCUCgAUG- -5'
29944 3' -57.3 NC_006273.1 + 128724 0.67 0.885545
Target:  5'- -uGGCCGCuucGGCcaGACGGUGAGgaACu -3'
miRNA:   3'- gcUCGGCGua-UCG--CUGCCGCUCgaUG- -5'
29944 3' -57.3 NC_006273.1 + 233297 0.67 0.885545
Target:  5'- cCGAGCCGUAgcauguggguGCGAUgcgguggauguGGUGGGCUGg -3'
miRNA:   3'- -GCUCGGCGUau--------CGCUG-----------CCGCUCGAUg -5'
29944 3' -57.3 NC_006273.1 + 213109 0.67 0.885545
Target:  5'- --uGCCGCAgaugAGCgcaccGACGGCgGAGCcGCg -3'
miRNA:   3'- gcuCGGCGUa---UCG-----CUGCCG-CUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 100395 0.67 0.885545
Target:  5'- aCGAGUU-CAUGGCGGCuguGGCGGGUcGCg -3'
miRNA:   3'- -GCUCGGcGUAUCGCUG---CCGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 1839 0.67 0.881504
Target:  5'- aCGAGCCGUuc-GCGuCGGCGccgcaccccgcgucGCUGCu -3'
miRNA:   3'- -GCUCGGCGuauCGCuGCCGCu-------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 196731 0.67 0.881504
Target:  5'- aCGAGCCGUuc-GCGuCGGCGccgcaccccgcgucGCUGCu -3'
miRNA:   3'- -GCUCGGCGuauCGCuGCCGCu-------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 189037 0.67 0.878768
Target:  5'- aCGAcaGCCGCGUGGUGGgggcccggacCGGCG-GCguagGCg -3'
miRNA:   3'- -GCU--CGGCGUAUCGCU----------GCCGCuCGa---UG- -5'
29944 3' -57.3 NC_006273.1 + 197106 0.67 0.878768
Target:  5'- uGGGuCCGac-GGCGAUGGCGGGUccgGCg -3'
miRNA:   3'- gCUC-GGCguaUCGCUGCCGCUCGa--UG- -5'
29944 3' -57.3 NC_006273.1 + 147961 0.67 0.878768
Target:  5'- aGAGCaGCGUAGCGccguguugGCGcGCGuGUUGCu -3'
miRNA:   3'- gCUCGgCGUAUCGC--------UGC-CGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 140717 0.67 0.878768
Target:  5'- gGAGUgGU--GGCGGCGGCgGGGCcgGCg -3'
miRNA:   3'- gCUCGgCGuaUCGCUGCCG-CUCGa-UG- -5'
29944 3' -57.3 NC_006273.1 + 68782 0.67 0.878768
Target:  5'- -aAGCgGCGgcGGCGAUGGCGGGgCUGg -3'
miRNA:   3'- gcUCGgCGUa-UCGCUGCCGCUC-GAUg -5'
29944 3' -57.3 NC_006273.1 + 2213 0.67 0.878768
Target:  5'- uGGGuCCGac-GGCGAUGGCGGGUccgGCg -3'
miRNA:   3'- gCUC-GGCguaUCGCUGCCGCUCGa--UG- -5'
29944 3' -57.3 NC_006273.1 + 79094 0.67 0.877388
Target:  5'- -cAGCCGCGggguugauacccAGCGACGGCGucGCUc- -3'
miRNA:   3'- gcUCGGCGUa-----------UCGCUGCCGCu-CGAug -5'
29944 3' -57.3 NC_006273.1 + 56135 0.67 0.871786
Target:  5'- aCGGGCCGCGga--GGCGGCGAcCgACg -3'
miRNA:   3'- -GCUCGGCGUaucgCUGCCGCUcGaUG- -5'
29944 3' -57.3 NC_006273.1 + 60903 0.67 0.871786
Target:  5'- gCGGG-CGCGUGauGCGACGGUugacaaAGCUACa -3'
miRNA:   3'- -GCUCgGCGUAU--CGCUGCCGc-----UCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 57695 0.67 0.871786
Target:  5'- -cAGCCGCAgcgccAGCGuCGGCG-GCUcCg -3'
miRNA:   3'- gcUCGGCGUa----UCGCuGCCGCuCGAuG- -5'
29944 3' -57.3 NC_006273.1 + 80955 0.67 0.871786
Target:  5'- gCGAGUCGCccAGCGGguCGGCcAGCUcGCa -3'
miRNA:   3'- -GCUCGGCGuaUCGCU--GCCGcUCGA-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.