miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 3' -57.3 NC_006273.1 + 67 0.77 0.389699
Target:  5'- gGAGuuGCGUguguggacGGCGACGGCGAcuaguugcguguGCUGCg -3'
miRNA:   3'- gCUCggCGUA--------UCGCUGCCGCU------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 1202 0.68 0.841904
Target:  5'- gGAGuuGCGg---GAUGGCGAGCUGu -3'
miRNA:   3'- gCUCggCGUaucgCUGCCGCUCGAUg -5'
29944 3' -57.3 NC_006273.1 + 1265 0.66 0.931978
Target:  5'- -uGGUCGCAgcGCGACG-CGGGC-ACg -3'
miRNA:   3'- gcUCGGCGUauCGCUGCcGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 1705 0.71 0.679123
Target:  5'- gCGcGCCGaggaGGCGACGGCgcucggacggGAGCUGCg -3'
miRNA:   3'- -GCuCGGCgua-UCGCUGCCG----------CUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 1839 0.67 0.881504
Target:  5'- aCGAGCCGUuc-GCGuCGGCGccgcaccccgcgucGCUGCu -3'
miRNA:   3'- -GCUCGGCGuauCGCuGCCGCu-------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 1972 0.67 0.89784
Target:  5'- gGGGCCGgcgacggggacgaCGUcGCGccaGCGGCGAGCgGCa -3'
miRNA:   3'- gCUCGGC-------------GUAuCGC---UGCCGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 2213 0.67 0.878768
Target:  5'- uGGGuCCGac-GGCGAUGGCGGGUccgGCg -3'
miRNA:   3'- gCUC-GGCguaUCGCUGCCGCUCGa--UG- -5'
29944 3' -57.3 NC_006273.1 + 2321 0.68 0.864604
Target:  5'- aCGGGCaCGUGUAcccGCuGGCGGCgGAGCUGu -3'
miRNA:   3'- -GCUCG-GCGUAU---CG-CUGCCG-CUCGAUg -5'
29944 3' -57.3 NC_006273.1 + 2417 0.69 0.791887
Target:  5'- cCGAgGCCGC---GCGGCGGCu-GCUGCc -3'
miRNA:   3'- -GCU-CGGCGuauCGCUGCCGcuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 2554 0.69 0.774057
Target:  5'- cCGGGCCGC--GGCGA-GGCuGAGgUGCu -3'
miRNA:   3'- -GCUCGGCGuaUCGCUgCCG-CUCgAUG- -5'
29944 3' -57.3 NC_006273.1 + 15419 0.71 0.708354
Target:  5'- aGAcGCCGCGUugcccgaugAGCGACGcgagcGCGAGCgGCg -3'
miRNA:   3'- gCU-CGGCGUA---------UCGCUGC-----CGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 30686 0.66 0.921696
Target:  5'- -cGGCCGC--GGUGcCGGCG-GCUAUg -3'
miRNA:   3'- gcUCGGCGuaUCGCuGCCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 31281 0.68 0.864604
Target:  5'- aGAGCCGUucggGGCGuGCGGcCGcGCUAg -3'
miRNA:   3'- gCUCGGCGua--UCGC-UGCC-GCuCGAUg -5'
29944 3' -57.3 NC_006273.1 + 31452 0.66 0.91622
Target:  5'- gCGaAGCCGCcaugaGGCGGUG-GCUGCg -3'
miRNA:   3'- -GC-UCGGCGuaucgCUGCCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 34999 0.68 0.8602
Target:  5'- gCGaAGCgaCGCGgAGCGACGGCGguaaagccagacagcGGCUAUa -3'
miRNA:   3'- -GC-UCG--GCGUaUCGCUGCCGC---------------UCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 35465 0.68 0.849657
Target:  5'- gCGAGCCGCccaGGCGGaucuugcuacCGGCgugGAGCUGa -3'
miRNA:   3'- -GCUCGGCGua-UCGCU----------GCCG---CUCGAUg -5'
29944 3' -57.3 NC_006273.1 + 35888 0.69 0.817603
Target:  5'- uGAuGCCGUGcAGCGGCGGCcAGC-ACa -3'
miRNA:   3'- gCU-CGGCGUaUCGCUGCCGcUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 36716 0.69 0.800604
Target:  5'- -cGGCCGCG-AGCGgagGCGcGCGAGCgGCg -3'
miRNA:   3'- gcUCGGCGUaUCGC---UGC-CGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 38086 0.71 0.717987
Target:  5'- --cGCCGCGcGGCcucGGCGGCGGGCgccgACu -3'
miRNA:   3'- gcuCGGCGUaUCG---CUGCCGCUCGa---UG- -5'
29944 3' -57.3 NC_006273.1 + 39576 0.69 0.800604
Target:  5'- cCGcGGCCGCGaccgAGgGGCGGgGGGCgcgGCg -3'
miRNA:   3'- -GC-UCGGCGUa---UCgCUGCCgCUCGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.