miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 3' -57.3 NC_006273.1 + 39829 0.75 0.457922
Target:  5'- gGGGCUcaGCGUGuggcGCGGCGGCGAGCcGCu -3'
miRNA:   3'- gCUCGG--CGUAU----CGCUGCCGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 40005 0.77 0.389699
Target:  5'- gGAGuuGCGUguguggacGGCGACGGCGAcuaguugcguguGCUGCg -3'
miRNA:   3'- gCUCggCGUA--------UCGCUGCCGCU------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 41140 0.68 0.841904
Target:  5'- gGAGuuGCGg---GAUGGCGAGCUGu -3'
miRNA:   3'- gCUCggCGUaucgCUGCCGCUCGAUg -5'
29944 3' -57.3 NC_006273.1 + 42743 1.1 0.002673
Target:  5'- aCGAGCCGCAUAGCGACGGCGAGCUACg -3'
miRNA:   3'- -GCUCGGCGUAUCGCUGCCGCUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 44463 0.68 0.864604
Target:  5'- aCGGGCUaGCGUAuaacaagccgcGCGACaacgGGCGAGCgGCg -3'
miRNA:   3'- -GCUCGG-CGUAU-----------CGCUG----CCGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 45430 0.7 0.76496
Target:  5'- gCGAGCCGCcca-CGcCGGCcgacGAGCUGCa -3'
miRNA:   3'- -GCUCGGCGuaucGCuGCCG----CUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 47196 0.76 0.397859
Target:  5'- aCGAGCgGCAgagaAGCaGACGGCGAGCc-- -3'
miRNA:   3'- -GCUCGgCGUa---UCG-CUGCCGCUCGaug -5'
29944 3' -57.3 NC_006273.1 + 47481 0.66 0.910522
Target:  5'- aGAGCaGgAgaaCGACGGCGAGCcGCg -3'
miRNA:   3'- gCUCGgCgUaucGCUGCCGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 54007 0.68 0.841904
Target:  5'- aCGAGCgGaCAUAGCgGACcGUGAGCggACg -3'
miRNA:   3'- -GCUCGgC-GUAUCG-CUGcCGCUCGa-UG- -5'
29944 3' -57.3 NC_006273.1 + 54923 0.73 0.570697
Target:  5'- gGGGUCG-AUAG-GGCGGUGGGCUGCa -3'
miRNA:   3'- gCUCGGCgUAUCgCUGCCGCUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 54946 0.67 0.904603
Target:  5'- -cAGUCGgGUGGUGGCGGCGguGGCg-- -3'
miRNA:   3'- gcUCGGCgUAUCGCUGCCGC--UCGaug -5'
29944 3' -57.3 NC_006273.1 + 56135 0.67 0.871786
Target:  5'- aCGGGCCGCGga--GGCGGCGAcCgACg -3'
miRNA:   3'- -GCUCGGCGUaucgCUGCCGCUcGaUG- -5'
29944 3' -57.3 NC_006273.1 + 57695 0.67 0.871786
Target:  5'- -cAGCCGCAgcgccAGCGuCGGCG-GCUcCg -3'
miRNA:   3'- gcUCGGCGUa----UCGCuGCCGCuCGAuG- -5'
29944 3' -57.3 NC_006273.1 + 58354 0.66 0.91622
Target:  5'- -cAGCgCGCGcUGGCGAUGGaGAGCcGCg -3'
miRNA:   3'- gcUCG-GCGU-AUCGCUGCCgCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 60903 0.67 0.871786
Target:  5'- gCGGG-CGCGUGauGCGACGGUugacaaAGCUACa -3'
miRNA:   3'- -GCUCgGCGUAU--CGCUGCCGc-----UCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 62039 0.69 0.783035
Target:  5'- aGAGCgGCGgcaccGCGGCGGCG-GCggACu -3'
miRNA:   3'- gCUCGgCGUau---CGCUGCCGCuCGa-UG- -5'
29944 3' -57.3 NC_006273.1 + 64073 0.69 0.791887
Target:  5'- uGAGCUGCGgccaucagagcAGCGGCggGGCGAGCa-- -3'
miRNA:   3'- gCUCGGCGUa----------UCGCUG--CCGCUCGaug -5'
29944 3' -57.3 NC_006273.1 + 64253 0.67 0.904603
Target:  5'- gCGGGCacggGCGUuGCGGCGGCGgccgaAGCggaugGCg -3'
miRNA:   3'- -GCUCGg---CGUAuCGCUGCCGC-----UCGa----UG- -5'
29944 3' -57.3 NC_006273.1 + 68782 0.67 0.878768
Target:  5'- -aAGCgGCGgcGGCGAUGGCGGGgCUGg -3'
miRNA:   3'- gcUCGgCGUa-UCGCUGCCGCUC-GAUg -5'
29944 3' -57.3 NC_006273.1 + 70107 0.68 0.857225
Target:  5'- aGcGCCGCGcUGGaUGACGGUGAugcgcgGCUACa -3'
miRNA:   3'- gCuCGGCGU-AUC-GCUGCCGCU------CGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.