miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 3' -57.3 NC_006273.1 + 234898 0.77 0.389699
Target:  5'- gGAGuuGCGUguguggacGGCGACGGCGAcuaguugcguguGCUGCg -3'
miRNA:   3'- gCUCggCGUA--------UCGCUGCCGCU------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 234469 0.69 0.800604
Target:  5'- cCGcGGCCGCGaccgAGgGGCGGgGGGCgcgGCg -3'
miRNA:   3'- -GC-UCGGCGUa---UCgCUGCCgCUCGa--UG- -5'
29944 3' -57.3 NC_006273.1 + 233526 0.67 0.885545
Target:  5'- -cGGCCGUAgcAGCGACG-CGGGgUGCg -3'
miRNA:   3'- gcUCGGCGUa-UCGCUGCcGCUCgAUG- -5'
29944 3' -57.3 NC_006273.1 + 233297 0.67 0.885545
Target:  5'- cCGAGCCGUAgcauguggguGCGAUgcgguggauguGGUGGGCUGg -3'
miRNA:   3'- -GCUCGGCGUau--------CGCUG-----------CCGCUCGAUg -5'
29944 3' -57.3 NC_006273.1 + 232979 0.71 0.717987
Target:  5'- --cGCCGCGcGGCcucGGCGGCGGGCgccgACu -3'
miRNA:   3'- gcuCGGCGUaUCG---CUGCCGCUCGa---UG- -5'
29944 3' -57.3 NC_006273.1 + 231179 0.68 0.825871
Target:  5'- cCGAGCUGCGguaugGGUcACGGCG-GCgUGCg -3'
miRNA:   3'- -GCUCGGCGUa----UCGcUGCCGCuCG-AUG- -5'
29944 3' -57.3 NC_006273.1 + 229543 0.71 0.669297
Target:  5'- aGGGCCGCcaauUGGCGgcgacagauGCGGCG-GUUACa -3'
miRNA:   3'- gCUCGGCGu---AUCGC---------UGCCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 221811 0.68 0.841904
Target:  5'- cCGGGCCGCccGGCG--GGUGAGCa-- -3'
miRNA:   3'- -GCUCGGCGuaUCGCugCCGCUCGaug -5'
29944 3' -57.3 NC_006273.1 + 218615 0.69 0.817603
Target:  5'- aGAcGCUGC--AGgGGCGGCGAGCg-- -3'
miRNA:   3'- gCU-CGGCGuaUCgCUGCCGCUCGaug -5'
29944 3' -57.3 NC_006273.1 + 218188 0.66 0.910522
Target:  5'- --cGUCGCGUGGCaugGGCGGCG-GCcgACg -3'
miRNA:   3'- gcuCGGCGUAUCG---CUGCCGCuCGa-UG- -5'
29944 3' -57.3 NC_006273.1 + 213926 0.71 0.717987
Target:  5'- uGAGCaCGCugagGGCGACGGUGgcgguaAGCUGg -3'
miRNA:   3'- gCUCG-GCGua--UCGCUGCCGC------UCGAUg -5'
29944 3' -57.3 NC_006273.1 + 213676 0.71 0.680104
Target:  5'- aGAGCCGCGccgacaaaggccugcGGCGACGGCuGGC-ACa -3'
miRNA:   3'- gCUCGGCGUa--------------UCGCUGCCGcUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 213109 0.67 0.885545
Target:  5'- --uGCCGCAgaugAGCgcaccGACGGCgGAGCcGCg -3'
miRNA:   3'- gcuCGGCGUa---UCG-----CUGCCG-CUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 211722 0.66 0.91622
Target:  5'- gGGGCCGCAcggagcGCGACGuCGAGgUAg -3'
miRNA:   3'- gCUCGGCGUau----CGCUGCcGCUCgAUg -5'
29944 3' -57.3 NC_006273.1 + 204994 0.72 0.649567
Target:  5'- aGGGuUCGCcagAGCGACGuGaCGAGCUGCg -3'
miRNA:   3'- gCUC-GGCGua-UCGCUGC-C-GCUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 203987 0.71 0.717987
Target:  5'- uGAGCCGC--GGCGAUucgGGCGuGCcGCg -3'
miRNA:   3'- gCUCGGCGuaUCGCUG---CCGCuCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 202639 0.66 0.91622
Target:  5'- --uGCCGCAguugcuggAGCG-CGGCcuGCUACa -3'
miRNA:   3'- gcuCGGCGUa-------UCGCuGCCGcuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 199422 0.66 0.930492
Target:  5'- cCGaAGCCGCGcgAGCGuGCGaGCGGgguucaccugcagcGCUACg -3'
miRNA:   3'- -GC-UCGGCGUa-UCGC-UGC-CGCU--------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 197310 0.69 0.791887
Target:  5'- cCGAgGCCGC---GCGGCGGCu-GCUGCc -3'
miRNA:   3'- -GCU-CGGCGuauCGCUGCCGcuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 197214 0.68 0.864604
Target:  5'- aCGGGCaCGUGUAcccGCuGGCGGCgGAGCUGu -3'
miRNA:   3'- -GCUCG-GCGUAU---CG-CUGCCG-CUCGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.