miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 3' -57.3 NC_006273.1 + 232979 0.71 0.717987
Target:  5'- --cGCCGCGcGGCcucGGCGGCGGGCgccgACu -3'
miRNA:   3'- gcuCGGCGUaUCG---CUGCCGCUCGa---UG- -5'
29944 3' -57.3 NC_006273.1 + 167255 0.72 0.639679
Target:  5'- uGGGCgGCGUGGUGACcguggcgguGGCGGGCaugACg -3'
miRNA:   3'- gCUCGgCGUAUCGCUG---------CCGCUCGa--UG- -5'
29944 3' -57.3 NC_006273.1 + 125194 0.72 0.648579
Target:  5'- -uGGCCGcCAUAGCGGCGGUGAaauccugGCcGCg -3'
miRNA:   3'- gcUCGGC-GUAUCGCUGCCGCU-------CGaUG- -5'
29944 3' -57.3 NC_006273.1 + 162559 0.72 0.649567
Target:  5'- uGAGCCcccCGUAGCGcACGaGCGAGCagGCg -3'
miRNA:   3'- gCUCGGc--GUAUCGC-UGC-CGCUCGa-UG- -5'
29944 3' -57.3 NC_006273.1 + 229543 0.71 0.669297
Target:  5'- aGGGCCGCcaauUGGCGgcgacagauGCGGCG-GUUACa -3'
miRNA:   3'- gCUCGGCGu---AUCGC---------UGCCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 213676 0.71 0.680104
Target:  5'- aGAGCCGCGccgacaaaggccugcGGCGACGGCuGGC-ACa -3'
miRNA:   3'- gCUCGGCGUa--------------UCGCUGCCGcUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 102281 0.71 0.69866
Target:  5'- uGAGaaugaCGCGUGGCGGCGGUGAcagggGCaACg -3'
miRNA:   3'- gCUCg----GCGUAUCGCUGCCGCU-----CGaUG- -5'
29944 3' -57.3 NC_006273.1 + 145083 0.71 0.708354
Target:  5'- gCGAcGCCGC-UGGCGGCGGC--GCUGa -3'
miRNA:   3'- -GCU-CGGCGuAUCGCUGCCGcuCGAUg -5'
29944 3' -57.3 NC_006273.1 + 213926 0.71 0.717987
Target:  5'- uGAGCaCGCugagGGCGACGGUGgcgguaAGCUGg -3'
miRNA:   3'- gCUCG-GCGua--UCGCUGCCGC------UCGAUg -5'
29944 3' -57.3 NC_006273.1 + 196598 0.72 0.629785
Target:  5'- gCGcGCCGagaGGCGACGGCgcucggacggGAGCUGCg -3'
miRNA:   3'- -GCuCGGCguaUCGCUGCCG----------CUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 122640 0.72 0.629785
Target:  5'- aGAGCUGCuguuGCGACGGCGAauGggACg -3'
miRNA:   3'- gCUCGGCGuau-CGCUGCCGCU--CgaUG- -5'
29944 3' -57.3 NC_006273.1 + 113499 0.73 0.570697
Target:  5'- gGAuGCCGUAgc-CGGCGGCGGGUUGCc -3'
miRNA:   3'- gCU-CGGCGUaucGCUGCCGCUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 86690 0.77 0.389699
Target:  5'- aGAuGCCGCAUAgGCGACGGagGAGCUccaGCa -3'
miRNA:   3'- gCU-CGGCGUAU-CGCUGCCg-CUCGA---UG- -5'
29944 3' -57.3 NC_006273.1 + 67 0.77 0.389699
Target:  5'- gGAGuuGCGUguguggacGGCGACGGCGAcuaguugcguguGCUGCg -3'
miRNA:   3'- gCUCggCGUA--------UCGCUGCCGCU------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 234898 0.77 0.389699
Target:  5'- gGAGuuGCGUguguggacGGCGACGGCGAcuaguugcguguGCUGCg -3'
miRNA:   3'- gCUCggCGUA--------UCGCUGCCGCU------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 99488 0.77 0.39295
Target:  5'- cCGAGUCGUcuucuugcgguaccgGUGGUGGCGGCGgcGGCUGCu -3'
miRNA:   3'- -GCUCGGCG---------------UAUCGCUGCCGC--UCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 39829 0.75 0.457922
Target:  5'- gGGGCUcaGCGUGuggcGCGGCGGCGAGCcGCu -3'
miRNA:   3'- gCUCGG--CGUAU----CGCUGCCGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 165666 0.75 0.485109
Target:  5'- aGAGCCGCAauccgGGCGGCGGCacaucaAGuCUGCg -3'
miRNA:   3'- gCUCGGCGUa----UCGCUGCCGc-----UC-GAUG- -5'
29944 3' -57.3 NC_006273.1 + 163073 0.75 0.485109
Target:  5'- cCGAgGCgGC--GGCGACGGCGgcGGCUGCg -3'
miRNA:   3'- -GCU-CGgCGuaUCGCUGCCGC--UCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 54923 0.73 0.570697
Target:  5'- gGGGUCG-AUAG-GGCGGUGGGCUGCa -3'
miRNA:   3'- gCUCGGCgUAUCgCUGCCGCUCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.