miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 3' -57.3 NC_006273.1 + 42743 1.1 0.002673
Target:  5'- aCGAGCCGCAUAGCGACGGCGAGCUACg -3'
miRNA:   3'- -GCUCGGCGUAUCGCUGCCGCUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 15419 0.71 0.708354
Target:  5'- aGAcGCCGCGUugcccgaugAGCGACGcgagcGCGAGCgGCg -3'
miRNA:   3'- gCU-CGGCGUA---------UCGCUGC-----CGCUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 185291 0.71 0.717987
Target:  5'- gGAGaaGCGcAGCGuCGGCGAGCg-- -3'
miRNA:   3'- gCUCggCGUaUCGCuGCCGCUCGaug -5'
29944 3' -57.3 NC_006273.1 + 160129 0.66 0.931978
Target:  5'- -cGGCCGCc--GCGGCGGCcAGCg-- -3'
miRNA:   3'- gcUCGGCGuauCGCUGCCGcUCGaug -5'
29944 3' -57.3 NC_006273.1 + 176620 0.76 0.397859
Target:  5'- gCGuGUuugCGCGUAGCGACGaGCaGAGCUGCa -3'
miRNA:   3'- -GCuCG---GCGUAUCGCUGC-CG-CUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 93565 0.74 0.513043
Target:  5'- uGAGCCuggGCAacuugAGCGGCGGCGGcCUGCg -3'
miRNA:   3'- gCUCGG---CGUa----UCGCUGCCGCUcGAUG- -5'
29944 3' -57.3 NC_006273.1 + 84054 0.73 0.570697
Target:  5'- uGAGCCGCGaAGCGGCgGGCgGAGUg-- -3'
miRNA:   3'- gCUCGGCGUaUCGCUG-CCG-CUCGaug -5'
29944 3' -57.3 NC_006273.1 + 92586 0.73 0.570697
Target:  5'- cCGuGCC-CAccAGCGACGGCG-GCUGCu -3'
miRNA:   3'- -GCuCGGcGUa-UCGCUGCCGCuCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 204994 0.72 0.649567
Target:  5'- aGGGuUCGCcagAGCGACGuGaCGAGCUGCg -3'
miRNA:   3'- gCUC-GGCGua-UCGCUGC-C-GCUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 144312 0.71 0.708354
Target:  5'- -uGGCgGCGUugugcGCGGCGGUGGGCUGu -3'
miRNA:   3'- gcUCGgCGUAu----CGCUGCCGCUCGAUg -5'
29944 3' -57.3 NC_006273.1 + 1705 0.71 0.679123
Target:  5'- gCGcGCCGaggaGGCGACGGCgcucggacggGAGCUGCg -3'
miRNA:   3'- -GCuCGGCgua-UCGCUGCCG----------CUCGAUG- -5'
29944 3' -57.3 NC_006273.1 + 80385 0.72 0.649567
Target:  5'- gGAGCgGCggccGUGGCGGCGGC-AGCgGCg -3'
miRNA:   3'- gCUCGgCG----UAUCGCUGCCGcUCGaUG- -5'
29944 3' -57.3 NC_006273.1 + 40005 0.77 0.389699
Target:  5'- gGAGuuGCGUguguggacGGCGACGGCGAcuaguugcguguGCUGCg -3'
miRNA:   3'- gCUCggCGUA--------UCGCUGCCGCU------------CGAUG- -5'
29944 3' -57.3 NC_006273.1 + 111203 0.71 0.679123
Target:  5'- aCGAGCCaGaCGaGGCGGCGGCGguGGCguugGCa -3'
miRNA:   3'- -GCUCGG-C-GUaUCGCUGCCGC--UCGa---UG- -5'
29944 3' -57.3 NC_006273.1 + 157371 0.77 0.389699
Target:  5'- gGGGCUGCGUcgccuGCGACGGCGGGUg-- -3'
miRNA:   3'- gCUCGGCGUAu----CGCUGCCGCUCGaug -5'
29944 3' -57.3 NC_006273.1 + 115494 0.72 0.639679
Target:  5'- aGAGCCaGCGgcGCGGCGGCGAagaaaaucgGCcGCg -3'
miRNA:   3'- gCUCGG-CGUauCGCUGCCGCU---------CGaUG- -5'
29944 3' -57.3 NC_006273.1 + 86876 0.71 0.708354
Target:  5'- gGuAGUCGCGUAGCGGCGGCugcccAGCg-- -3'
miRNA:   3'- gC-UCGGCGUAUCGCUGCCGc----UCGaug -5'
29944 3' -57.3 NC_006273.1 + 158231 0.71 0.708354
Target:  5'- gCGGGCgCGCGUcggccGGCGACGGCG-GUUcGCc -3'
miRNA:   3'- -GCUCG-GCGUA-----UCGCUGCCGCuCGA-UG- -5'
29944 3' -57.3 NC_006273.1 + 47196 0.76 0.397859
Target:  5'- aCGAGCgGCAgagaAGCaGACGGCGAGCc-- -3'
miRNA:   3'- -GCUCGgCGUa---UCG-CUGCCGCUCGaug -5'
29944 3' -57.3 NC_006273.1 + 114487 0.73 0.558041
Target:  5'- gCGGGCCGCAaacgcaaaucagcaUccucGGCGACGGCGuGCacgGCg -3'
miRNA:   3'- -GCUCGGCGU--------------A----UCGCUGCCGCuCGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.