miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 5' -55.5 NC_006273.1 + 123168 0.66 0.97478
Target:  5'- gCGCAU--UGcCACCGCCG-CGUcCUCc -3'
miRNA:   3'- aGCGUAagAC-GUGGCGGCuGCA-GAGc -5'
29944 5' -55.5 NC_006273.1 + 194979 0.66 0.97478
Target:  5'- gCGUAUcgaaUGCGCCGCCuGugGcCUCc -3'
miRNA:   3'- aGCGUAag--ACGUGGCGG-CugCaGAGc -5'
29944 5' -55.5 NC_006273.1 + 60726 0.66 0.97478
Target:  5'- cCGUAUgcugUCaGCGCCGCUcaGACGaauUCUCGa -3'
miRNA:   3'- aGCGUA----AGaCGUGGCGG--CUGC---AGAGC- -5'
29944 5' -55.5 NC_006273.1 + 227741 0.66 0.973248
Target:  5'- aUCGCAgcugUCUuCGCCGCCGcagcuguagcaguuaACGUCgcCGg -3'
miRNA:   3'- -AGCGUa---AGAcGUGGCGGC---------------UGCAGa-GC- -5'
29944 5' -55.5 NC_006273.1 + 68001 0.66 0.972189
Target:  5'- aCGC--UCUGC-CCGgCGGCGUCa-- -3'
miRNA:   3'- aGCGuaAGACGuGGCgGCUGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 119398 0.66 0.969412
Target:  5'- cCGUGUUCgaugaaacgcGCGCCGCC--CGUCUCa -3'
miRNA:   3'- aGCGUAAGa---------CGUGGCGGcuGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 68530 0.66 0.969412
Target:  5'- cCGCGUUCUGgACUGCaucCGUC-CGg -3'
miRNA:   3'- aGCGUAAGACgUGGCGgcuGCAGaGC- -5'
29944 5' -55.5 NC_006273.1 + 201967 0.66 0.969412
Target:  5'- gUCGC-----GCGCCGCCGACGcC-CGa -3'
miRNA:   3'- -AGCGuaagaCGUGGCGGCUGCaGaGC- -5'
29944 5' -55.5 NC_006273.1 + 71675 0.66 0.966442
Target:  5'- gCGCGccugCUGCacaaugugGCCGCCGACGUggCa -3'
miRNA:   3'- aGCGUaa--GACG--------UGGCGGCUGCAgaGc -5'
29944 5' -55.5 NC_006273.1 + 173550 0.66 0.966442
Target:  5'- gCGCcgUCUGUACCGUggCGugG-CUUa -3'
miRNA:   3'- aGCGuaAGACGUGGCG--GCugCaGAGc -5'
29944 5' -55.5 NC_006273.1 + 6960 0.66 0.966442
Target:  5'- gUCGCGUUgacaCUGgAgCGCCG-CgGUCUCGa -3'
miRNA:   3'- -AGCGUAA----GACgUgGCGGCuG-CAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 56349 0.66 0.966442
Target:  5'- -gGCAcgUUGCcagcugaaACCGCCGuCGUCUCc -3'
miRNA:   3'- agCGUaaGACG--------UGGCGGCuGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 64988 0.66 0.966442
Target:  5'- cUCGUug---GCGCgCGCCGugGUCUUc -3'
miRNA:   3'- -AGCGuaagaCGUG-GCGGCugCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 64758 0.66 0.966442
Target:  5'- gUUGCAaaagaagCUGC-CCGCCGGCGgg-CGg -3'
miRNA:   3'- -AGCGUaa-----GACGuGGCGGCUGCagaGC- -5'
29944 5' -55.5 NC_006273.1 + 154988 0.66 0.966442
Target:  5'- uUCGC--UCUGCGCCGCUGcCGcCgccaCGg -3'
miRNA:   3'- -AGCGuaAGACGUGGCGGCuGCaGa---GC- -5'
29944 5' -55.5 NC_006273.1 + 188189 0.66 0.966442
Target:  5'- cUCGCcgUCUGCuucucuGCCGCuCGugGUgC-CGa -3'
miRNA:   3'- -AGCGuaAGACG------UGGCG-GCugCA-GaGC- -5'
29944 5' -55.5 NC_006273.1 + 214844 0.66 0.966134
Target:  5'- gCGCGUUagccucCUGCGCCuGCaugguggCGACgGUCUCGg -3'
miRNA:   3'- aGCGUAA------GACGUGG-CG-------GCUG-CAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 198812 0.66 0.966134
Target:  5'- -aGCAUUCccuagUGCugCGCaCGGCGcgcgaucuggggcUCUCGg -3'
miRNA:   3'- agCGUAAG-----ACGugGCG-GCUGC-------------AGAGC- -5'
29944 5' -55.5 NC_006273.1 + 21910 0.66 0.963274
Target:  5'- aUCGCGgacaacaaCUGCAgCCGCCGGCa--UCGg -3'
miRNA:   3'- -AGCGUaa------GACGU-GGCGGCUGcagAGC- -5'
29944 5' -55.5 NC_006273.1 + 131062 0.67 0.961276
Target:  5'- -gGCAgcagCUGCGCCGggccuaucaggaacaCCGACGUCg-- -3'
miRNA:   3'- agCGUaa--GACGUGGC---------------GGCUGCAGagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.