Results 1 - 20 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 173550 | 0.66 | 0.966442 |
Target: 5'- gCGCcgUCUGUACCGUggCGugG-CUUa -3' miRNA: 3'- aGCGuaAGACGUGGCG--GCugCaGAGc -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 68001 | 0.66 | 0.972189 |
Target: 5'- aCGC--UCUGC-CCGgCGGCGUCa-- -3' miRNA: 3'- aGCGuaAGACGuGGCgGCUGCAGagc -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 119398 | 0.66 | 0.969412 |
Target: 5'- cCGUGUUCgaugaaacgcGCGCCGCC--CGUCUCa -3' miRNA: 3'- aGCGUAAGa---------CGUGGCGGcuGCAGAGc -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 201967 | 0.66 | 0.969412 |
Target: 5'- gUCGC-----GCGCCGCCGACGcC-CGa -3' miRNA: 3'- -AGCGuaagaCGUGGCGGCUGCaGaGC- -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 6960 | 0.66 | 0.966442 |
Target: 5'- gUCGCGUUgacaCUGgAgCGCCG-CgGUCUCGa -3' miRNA: 3'- -AGCGUAA----GACgUgGCGGCuG-CAGAGC- -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 198812 | 0.66 | 0.966134 |
Target: 5'- -aGCAUUCccuagUGCugCGCaCGGCGcgcgaucuggggcUCUCGg -3' miRNA: 3'- agCGUAAG-----ACGugGCG-GCUGC-------------AGAGC- -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 64988 | 0.66 | 0.966442 |
Target: 5'- cUCGUug---GCGCgCGCCGugGUCUUc -3' miRNA: 3'- -AGCGuaagaCGUG-GCGGCugCAGAGc -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 188189 | 0.66 | 0.966442 |
Target: 5'- cUCGCcgUCUGCuucucuGCCGCuCGugGUgC-CGa -3' miRNA: 3'- -AGCGuaAGACG------UGGCG-GCugCA-GaGC- -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 154988 | 0.66 | 0.966442 |
Target: 5'- uUCGC--UCUGCGCCGCUGcCGcCgccaCGg -3' miRNA: 3'- -AGCGuaAGACGUGGCGGCuGCaGa---GC- -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 71675 | 0.66 | 0.966442 |
Target: 5'- gCGCGccugCUGCacaaugugGCCGCCGACGUggCa -3' miRNA: 3'- aGCGUaa--GACG--------UGGCGGCUGCAgaGc -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 64758 | 0.66 | 0.966442 |
Target: 5'- gUUGCAaaagaagCUGC-CCGCCGGCGgg-CGg -3' miRNA: 3'- -AGCGUaa-----GACGuGGCGGCUGCagaGC- -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 194979 | 0.66 | 0.97478 |
Target: 5'- gCGUAUcgaaUGCGCCGCCuGugGcCUCc -3' miRNA: 3'- aGCGUAag--ACGUGGCGG-CugCaGAGc -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 227741 | 0.66 | 0.973248 |
Target: 5'- aUCGCAgcugUCUuCGCCGCCGcagcuguagcaguuaACGUCgcCGg -3' miRNA: 3'- -AGCGUa---AGAcGUGGCGGC---------------UGCAGa-GC- -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 68530 | 0.66 | 0.969412 |
Target: 5'- cCGCGUUCUGgACUGCaucCGUC-CGg -3' miRNA: 3'- aGCGUAAGACgUGGCGgcuGCAGaGC- -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 21910 | 0.66 | 0.963274 |
Target: 5'- aUCGCGgacaacaaCUGCAgCCGCCGGCa--UCGg -3' miRNA: 3'- -AGCGUaa------GACGU-GGCGGCUGcagAGC- -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 214844 | 0.66 | 0.966134 |
Target: 5'- gCGCGUUagccucCUGCGCCuGCaugguggCGACgGUCUCGg -3' miRNA: 3'- aGCGUAA------GACGUGG-CG-------GCUG-CAGAGC- -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 60726 | 0.66 | 0.97478 |
Target: 5'- cCGUAUgcugUCaGCGCCGCUcaGACGaauUCUCGa -3' miRNA: 3'- aGCGUA----AGaCGUGGCGG--CUGC---AGAGC- -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 56349 | 0.66 | 0.966442 |
Target: 5'- -gGCAcgUUGCcagcugaaACCGCCGuCGUCUCc -3' miRNA: 3'- agCGUaaGACG--------UGGCGGCuGCAGAGc -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 123168 | 0.66 | 0.97478 |
Target: 5'- gCGCAU--UGcCACCGCCG-CGUcCUCc -3' miRNA: 3'- aGCGUAagAC-GUGGCGGCuGCA-GAGc -5' |
|||||||
29944 | 5' | -55.5 | NC_006273.1 | + | 159836 | 0.67 | 0.952536 |
Target: 5'- cCGCAgu-UGUucaaagucgGCCGCCGAgGUUUCGa -3' miRNA: 3'- aGCGUaagACG---------UGGCGGCUgCAGAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home