miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 5' -55.5 NC_006273.1 + 42777 1.09 0.00572
Target:  5'- gUCGCAUUCUGCACCGCCGACGUCUCGu -3'
miRNA:   3'- -AGCGUAAGACGUGGCGGCUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 76435 0.81 0.318264
Target:  5'- gCGCGagCUGUACCGCCGcguCGUCUCGu -3'
miRNA:   3'- aGCGUaaGACGUGGCGGCu--GCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 161732 0.76 0.528194
Target:  5'- cUCGCGcUUUGCGCCGCCG-CGUCa-- -3'
miRNA:   3'- -AGCGUaAGACGUGGCGGCuGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 213712 0.75 0.596283
Target:  5'- gCGCAggUCgUGCACgucggccaccagCGCCGugGUCUCGg -3'
miRNA:   3'- aGCGUa-AG-ACGUG------------GCGGCugCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 134380 0.74 0.642794
Target:  5'- -gGUGUUCUGCgagauuuuauugguACCGCCGAUGaUCUCGu -3'
miRNA:   3'- agCGUAAGACG--------------UGGCGGCUGC-AGAGC- -5'
29944 5' -55.5 NC_006273.1 + 155497 0.74 0.675388
Target:  5'- cUUGCAaUCUGCGCCGUccagucaggaCGGCGUUUCa -3'
miRNA:   3'- -AGCGUaAGACGUGGCG----------GCUGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 73101 0.73 0.714384
Target:  5'- aUGCAccagCUGCugcuggaggACCGCCGACGUCUgCGc -3'
miRNA:   3'- aGCGUaa--GACG---------UGGCGGCUGCAGA-GC- -5'
29944 5' -55.5 NC_006273.1 + 118788 0.73 0.714384
Target:  5'- gUCGCGgacgcUCUGCAUCGCCGcaACGUgUCc -3'
miRNA:   3'- -AGCGUa----AGACGUGGCGGC--UGCAgAGc -5'
29944 5' -55.5 NC_006273.1 + 174157 0.72 0.733521
Target:  5'- cCGCAUcugCUGCACCGCCGc---CUCGa -3'
miRNA:   3'- aGCGUAa--GACGUGGCGGCugcaGAGC- -5'
29944 5' -55.5 NC_006273.1 + 174055 0.72 0.779773
Target:  5'- -gGCAUUC-GCGCCuCCaACGUCUCGg -3'
miRNA:   3'- agCGUAAGaCGUGGcGGcUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 144455 0.72 0.779773
Target:  5'- cUCGCAcuacacgggCU-CGCgCGCCGGCGUCUCGc -3'
miRNA:   3'- -AGCGUaa-------GAcGUG-GCGGCUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 219078 0.71 0.797464
Target:  5'- uUCGCA-UCgGuCACCGUCGAUGUCgUCGu -3'
miRNA:   3'- -AGCGUaAGaC-GUGGCGGCUGCAG-AGC- -5'
29944 5' -55.5 NC_006273.1 + 158759 0.71 0.806103
Target:  5'- gUCGCGccagUGCGCCGUCGACGccgCUCa -3'
miRNA:   3'- -AGCGUaag-ACGUGGCGGCUGCa--GAGc -5'
29944 5' -55.5 NC_006273.1 + 43150 0.71 0.814594
Target:  5'- cCGCGUUagGCACCGCgUGGCGUacCUCGg -3'
miRNA:   3'- aGCGUAAgaCGUGGCG-GCUGCA--GAGC- -5'
29944 5' -55.5 NC_006273.1 + 213073 0.7 0.846936
Target:  5'- -gGCGUUCguugGCGCCGCUGccGCGUCg-- -3'
miRNA:   3'- agCGUAAGa---CGUGGCGGC--UGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 167039 0.7 0.846936
Target:  5'- uUUGCAg-CUGCACgGCCGugGagUCGu -3'
miRNA:   3'- -AGCGUaaGACGUGgCGGCugCagAGC- -5'
29944 5' -55.5 NC_006273.1 + 13071 0.7 0.862038
Target:  5'- aCGaagUCUcugGCACCGCCGAUGUCa-- -3'
miRNA:   3'- aGCguaAGA---CGUGGCGGCUGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 164438 0.7 0.8693
Target:  5'- gUCGUcgUCUGCgGCCGCgGcCG-CUCGa -3'
miRNA:   3'- -AGCGuaAGACG-UGGCGgCuGCaGAGC- -5'
29944 5' -55.5 NC_006273.1 + 132362 0.69 0.876362
Target:  5'- cCGCGgccgCUGcCGCCG-CGGCGUUUCGu -3'
miRNA:   3'- aGCGUaa--GAC-GUGGCgGCUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 229129 0.69 0.88322
Target:  5'- gCGCuggUUGUuucGCCGCCGGCGagCUCGa -3'
miRNA:   3'- aGCGuaaGACG---UGGCGGCUGCa-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.