miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 5' -55.5 NC_006273.1 + 200975 0.69 0.889869
Target:  5'- gCGguUUC-GcCACCGCUGACGuUCUCa -3'
miRNA:   3'- aGCguAAGaC-GUGGCGGCUGC-AGAGc -5'
29944 5' -55.5 NC_006273.1 + 233271 0.69 0.894397
Target:  5'- cCGCGUUUgGCAcgcaaaucgcgcucCCGCCGGCGcCUCc -3'
miRNA:   3'- aGCGUAAGaCGU--------------GGCGGCUGCaGAGc -5'
29944 5' -55.5 NC_006273.1 + 38378 0.69 0.894397
Target:  5'- cCGCGUUUgGCAcgcaaaucgcgcucCCGCCGGCGcCUCc -3'
miRNA:   3'- aGCGUAAGaCGU--------------GGCGGCUGCaGAGc -5'
29944 5' -55.5 NC_006273.1 + 72396 0.69 0.896306
Target:  5'- cCGCAg-CUGcCGCCGUCGagccuccuccgcGCGUCUCGu -3'
miRNA:   3'- aGCGUaaGAC-GUGGCGGC------------UGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 139877 0.69 0.896306
Target:  5'- gCGCAgUCUccgGCCGCCGAUuUCUCGg -3'
miRNA:   3'- aGCGUaAGAcg-UGGCGGCUGcAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 119428 0.69 0.902527
Target:  5'- -aGCAUUCUGgAuCUGCaCGAUGUaCUCGg -3'
miRNA:   3'- agCGUAAGACgU-GGCG-GCUGCA-GAGC- -5'
29944 5' -55.5 NC_006273.1 + 86608 0.69 0.902527
Target:  5'- aCGCAcg--GCGCCGCCGcCGgcCUCGg -3'
miRNA:   3'- aGCGUaagaCGUGGCGGCuGCa-GAGC- -5'
29944 5' -55.5 NC_006273.1 + 98939 0.69 0.902527
Target:  5'- aCGCAgUCcGCcCCGCCGACGgugaUUCGu -3'
miRNA:   3'- aGCGUaAGaCGuGGCGGCUGCa---GAGC- -5'
29944 5' -55.5 NC_006273.1 + 204606 0.69 0.907939
Target:  5'- cCGCugcugCUGUuaucgucgccaccGCCGCCGGCGccguUCUCGg -3'
miRNA:   3'- aGCGuaa--GACG-------------UGGCGGCUGC----AGAGC- -5'
29944 5' -55.5 NC_006273.1 + 94601 0.68 0.914311
Target:  5'- -gGCAaa-UGCACCucgucGCCGGCGUCaUCGa -3'
miRNA:   3'- agCGUaagACGUGG-----CGGCUGCAG-AGC- -5'
29944 5' -55.5 NC_006273.1 + 133092 0.68 0.925205
Target:  5'- cCGCGUUgcccCUGuCACCGCCGccacGCGUCa-- -3'
miRNA:   3'- aGCGUAA----GAC-GUGGCGGC----UGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 121640 0.68 0.930317
Target:  5'- cUGCAUgagCacgGCGCCGCCGcCGUCg-- -3'
miRNA:   3'- aGCGUAa--Ga--CGUGGCGGCuGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 100370 0.68 0.930317
Target:  5'- aCGC-UUCUGCAgaUCGCaGACGUCgUCGc -3'
miRNA:   3'- aGCGuAAGACGU--GGCGgCUGCAG-AGC- -5'
29944 5' -55.5 NC_006273.1 + 169562 0.68 0.930317
Target:  5'- cCGCcugCUGCGCCGCCGAUug--CGg -3'
miRNA:   3'- aGCGuaaGACGUGGCGGCUGcagaGC- -5'
29944 5' -55.5 NC_006273.1 + 233217 0.68 0.935204
Target:  5'- cCGCug-CUGCcgcuGCCGCCGcCGUCgCGu -3'
miRNA:   3'- aGCGuaaGACG----UGGCGGCuGCAGaGC- -5'
29944 5' -55.5 NC_006273.1 + 38324 0.68 0.935204
Target:  5'- cCGCug-CUGCcgcuGCCGCCGcCGUCgCGu -3'
miRNA:   3'- aGCGuaaGACG----UGGCGGCuGCAGaGC- -5'
29944 5' -55.5 NC_006273.1 + 2352 0.68 0.935204
Target:  5'- gUCGCAcuUUCUGCG-CGCgGGCGUgCUgGg -3'
miRNA:   3'- -AGCGU--AAGACGUgGCGgCUGCA-GAgC- -5'
29944 5' -55.5 NC_006273.1 + 73139 0.68 0.935204
Target:  5'- cCGCAaaCUGCGCCGguggcugCGACGUUUCu -3'
miRNA:   3'- aGCGUaaGACGUGGCg------GCUGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 142270 0.68 0.935204
Target:  5'- cCGCAccCcGCugUGCCGACGUCgugUGg -3'
miRNA:   3'- aGCGUaaGaCGugGCGGCUGCAGa--GC- -5'
29944 5' -55.5 NC_006273.1 + 197245 0.68 0.935204
Target:  5'- gUCGCAcuUUCUGCG-CGCgGGCGUgCUgGg -3'
miRNA:   3'- -AGCGU--AAGACGUgGCGgCUGCA-GAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.