miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 5' -55.5 NC_006273.1 + 68208 0.67 0.959903
Target:  5'- cCGCGgccgCUGCGcCCGCCGugGcCa-- -3'
miRNA:   3'- aGCGUaa--GACGU-GGCGGCugCaGagc -5'
29944 5' -55.5 NC_006273.1 + 163838 0.67 0.959903
Target:  5'- gUCGCAagUCgccgGCagcgGCCGCCGGCGagggccCUCGu -3'
miRNA:   3'- -AGCGUa-AGa---CG----UGGCGGCUGCa-----GAGC- -5'
29944 5' -55.5 NC_006273.1 + 131695 0.67 0.956325
Target:  5'- aCGCGcgaaccggguuUUCUGgGCCGCCGGC-UUUCc -3'
miRNA:   3'- aGCGU-----------AAGACgUGGCGGCUGcAGAGc -5'
29944 5' -55.5 NC_006273.1 + 133581 0.67 0.956325
Target:  5'- cUCGU-UUCUGCcgaUGCCGGCGUCagUCGc -3'
miRNA:   3'- -AGCGuAAGACGug-GCGGCUGCAG--AGC- -5'
29944 5' -55.5 NC_006273.1 + 154554 0.67 0.956325
Target:  5'- -gGCg--CUGCGCCccgcgGCCGACGUCg-- -3'
miRNA:   3'- agCGuaaGACGUGG-----CGGCUGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 120189 0.67 0.954078
Target:  5'- gUCGCGUcggcguaacaacggCUGgaggacuuuuuCACCGCCucggcGACGUCUCGg -3'
miRNA:   3'- -AGCGUAa-------------GAC-----------GUGGCGG-----CUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 233540 0.67 0.952536
Target:  5'- aCGCGgggUGCGgCGCCGACGcgaacggCUCGu -3'
miRNA:   3'- aGCGUaagACGUgGCGGCUGCa------GAGC- -5'
29944 5' -55.5 NC_006273.1 + 38648 0.67 0.952536
Target:  5'- aCGCGgggUGCGgCGCCGACGcgaacggCUCGu -3'
miRNA:   3'- aGCGUaagACGUgGCGGCUGCa------GAGC- -5'
29944 5' -55.5 NC_006273.1 + 159836 0.67 0.952536
Target:  5'- cCGCAgu-UGUucaaagucgGCCGCCGAgGUUUCGa -3'
miRNA:   3'- aGCGUaagACG---------UGGCGGCUgCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 166572 0.67 0.952536
Target:  5'- aCGCGcg--GCGCCGCCGgcuacGCGUC-CGg -3'
miRNA:   3'- aGCGUaagaCGUGGCGGC-----UGCAGaGC- -5'
29944 5' -55.5 NC_006273.1 + 162260 0.67 0.94431
Target:  5'- gCGCAgUUUGCGgCGCaGACGUCggCGg -3'
miRNA:   3'- aGCGUaAGACGUgGCGgCUGCAGa-GC- -5'
29944 5' -55.5 NC_006273.1 + 72481 0.67 0.94431
Target:  5'- gUCGCAaaacgUCUGCACCGCU--UGUCg-- -3'
miRNA:   3'- -AGCGUa----AGACGUGGCGGcuGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 186747 0.67 0.939868
Target:  5'- cCGCug-CgUGCGCCGaCGGCGUUUCa -3'
miRNA:   3'- aGCGuaaG-ACGUGGCgGCUGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 120938 0.67 0.939412
Target:  5'- cUCGcCAUg--GCGCCGCCGccggugacgcgggGCGUCUUa -3'
miRNA:   3'- -AGC-GUAagaCGUGGCGGC-------------UGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 38324 0.68 0.935204
Target:  5'- cCGCug-CUGCcgcuGCCGCCGcCGUCgCGu -3'
miRNA:   3'- aGCGuaaGACG----UGGCGGCuGCAGaGC- -5'
29944 5' -55.5 NC_006273.1 + 2352 0.68 0.935204
Target:  5'- gUCGCAcuUUCUGCG-CGCgGGCGUgCUgGg -3'
miRNA:   3'- -AGCGU--AAGACGUgGCGgCUGCA-GAgC- -5'
29944 5' -55.5 NC_006273.1 + 142270 0.68 0.935204
Target:  5'- cCGCAccCcGCugUGCCGACGUCgugUGg -3'
miRNA:   3'- aGCGUaaGaCGugGCGGCUGCAGa--GC- -5'
29944 5' -55.5 NC_006273.1 + 73139 0.68 0.935204
Target:  5'- cCGCAaaCUGCGCCGguggcugCGACGUUUCu -3'
miRNA:   3'- aGCGUaaGACGUGGCg------GCUGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 197245 0.68 0.935204
Target:  5'- gUCGCAcuUUCUGCG-CGCgGGCGUgCUgGg -3'
miRNA:   3'- -AGCGU--AAGACGUgGCGgCUGCA-GAgC- -5'
29944 5' -55.5 NC_006273.1 + 233217 0.68 0.935204
Target:  5'- cCGCug-CUGCcgcuGCCGCCGcCGUCgCGu -3'
miRNA:   3'- aGCGuaaGACG----UGGCGGCuGCAGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.