miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 5' -55.5 NC_006273.1 + 169562 0.68 0.930317
Target:  5'- cCGCcugCUGCGCCGCCGAUug--CGg -3'
miRNA:   3'- aGCGuaaGACGUGGCGGCUGcagaGC- -5'
29944 5' -55.5 NC_006273.1 + 100370 0.68 0.930317
Target:  5'- aCGC-UUCUGCAgaUCGCaGACGUCgUCGc -3'
miRNA:   3'- aGCGuAAGACGU--GGCGgCUGCAG-AGC- -5'
29944 5' -55.5 NC_006273.1 + 121640 0.68 0.930317
Target:  5'- cUGCAUgagCacgGCGCCGCCGcCGUCg-- -3'
miRNA:   3'- aGCGUAa--Ga--CGUGGCGGCuGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 133092 0.68 0.925205
Target:  5'- cCGCGUUgcccCUGuCACCGCCGccacGCGUCa-- -3'
miRNA:   3'- aGCGUAA----GAC-GUGGCGGC----UGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 94601 0.68 0.914311
Target:  5'- -gGCAaa-UGCACCucgucGCCGGCGUCaUCGa -3'
miRNA:   3'- agCGUaagACGUGG-----CGGCUGCAG-AGC- -5'
29944 5' -55.5 NC_006273.1 + 204606 0.69 0.907939
Target:  5'- cCGCugcugCUGUuaucgucgccaccGCCGCCGGCGccguUCUCGg -3'
miRNA:   3'- aGCGuaa--GACG-------------UGGCGGCUGC----AGAGC- -5'
29944 5' -55.5 NC_006273.1 + 98939 0.69 0.902527
Target:  5'- aCGCAgUCcGCcCCGCCGACGgugaUUCGu -3'
miRNA:   3'- aGCGUaAGaCGuGGCGGCUGCa---GAGC- -5'
29944 5' -55.5 NC_006273.1 + 86608 0.69 0.902527
Target:  5'- aCGCAcg--GCGCCGCCGcCGgcCUCGg -3'
miRNA:   3'- aGCGUaagaCGUGGCGGCuGCa-GAGC- -5'
29944 5' -55.5 NC_006273.1 + 119428 0.69 0.902527
Target:  5'- -aGCAUUCUGgAuCUGCaCGAUGUaCUCGg -3'
miRNA:   3'- agCGUAAGACgU-GGCG-GCUGCA-GAGC- -5'
29944 5' -55.5 NC_006273.1 + 139877 0.69 0.896306
Target:  5'- gCGCAgUCUccgGCCGCCGAUuUCUCGg -3'
miRNA:   3'- aGCGUaAGAcg-UGGCGGCUGcAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 72396 0.69 0.896306
Target:  5'- cCGCAg-CUGcCGCCGUCGagccuccuccgcGCGUCUCGu -3'
miRNA:   3'- aGCGUaaGAC-GUGGCGGC------------UGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 38378 0.69 0.894397
Target:  5'- cCGCGUUUgGCAcgcaaaucgcgcucCCGCCGGCGcCUCc -3'
miRNA:   3'- aGCGUAAGaCGU--------------GGCGGCUGCaGAGc -5'
29944 5' -55.5 NC_006273.1 + 233271 0.69 0.894397
Target:  5'- cCGCGUUUgGCAcgcaaaucgcgcucCCGCCGGCGcCUCc -3'
miRNA:   3'- aGCGUAAGaCGU--------------GGCGGCUGCaGAGc -5'
29944 5' -55.5 NC_006273.1 + 200975 0.69 0.889869
Target:  5'- gCGguUUC-GcCACCGCUGACGuUCUCa -3'
miRNA:   3'- aGCguAAGaC-GUGGCGGCUGC-AGAGc -5'
29944 5' -55.5 NC_006273.1 + 229129 0.69 0.88322
Target:  5'- gCGCuggUUGUuucGCCGCCGGCGagCUCGa -3'
miRNA:   3'- aGCGuaaGACG---UGGCGGCUGCa-GAGC- -5'
29944 5' -55.5 NC_006273.1 + 132362 0.69 0.876362
Target:  5'- cCGCGgccgCUGcCGCCG-CGGCGUUUCGu -3'
miRNA:   3'- aGCGUaa--GAC-GUGGCgGCUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 164438 0.7 0.8693
Target:  5'- gUCGUcgUCUGCgGCCGCgGcCG-CUCGa -3'
miRNA:   3'- -AGCGuaAGACG-UGGCGgCuGCaGAGC- -5'
29944 5' -55.5 NC_006273.1 + 13071 0.7 0.862038
Target:  5'- aCGaagUCUcugGCACCGCCGAUGUCa-- -3'
miRNA:   3'- aGCguaAGA---CGUGGCGGCUGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 167039 0.7 0.846936
Target:  5'- uUUGCAg-CUGCACgGCCGugGagUCGu -3'
miRNA:   3'- -AGCGUaaGACGUGgCGGCugCagAGC- -5'
29944 5' -55.5 NC_006273.1 + 213073 0.7 0.846936
Target:  5'- -gGCGUUCguugGCGCCGCUGccGCGUCg-- -3'
miRNA:   3'- agCGUAAGa---CGUGGCGGC--UGCAGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.