miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 5' -55.5 NC_006273.1 + 2352 0.68 0.935204
Target:  5'- gUCGCAcuUUCUGCG-CGCgGGCGUgCUgGg -3'
miRNA:   3'- -AGCGU--AAGACGUgGCGgCUGCA-GAgC- -5'
29944 5' -55.5 NC_006273.1 + 6960 0.66 0.966442
Target:  5'- gUCGCGUUgacaCUGgAgCGCCG-CgGUCUCGa -3'
miRNA:   3'- -AGCGUAA----GACgUgGCGGCuG-CAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 13071 0.7 0.862038
Target:  5'- aCGaagUCUcugGCACCGCCGAUGUCa-- -3'
miRNA:   3'- aGCguaAGA---CGUGGCGGCUGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 21910 0.66 0.963274
Target:  5'- aUCGCGgacaacaaCUGCAgCCGCCGGCa--UCGg -3'
miRNA:   3'- -AGCGUaa------GACGU-GGCGGCUGcagAGC- -5'
29944 5' -55.5 NC_006273.1 + 38324 0.68 0.935204
Target:  5'- cCGCug-CUGCcgcuGCCGCCGcCGUCgCGu -3'
miRNA:   3'- aGCGuaaGACG----UGGCGGCuGCAGaGC- -5'
29944 5' -55.5 NC_006273.1 + 38378 0.69 0.894397
Target:  5'- cCGCGUUUgGCAcgcaaaucgcgcucCCGCCGGCGcCUCc -3'
miRNA:   3'- aGCGUAAGaCGU--------------GGCGGCUGCaGAGc -5'
29944 5' -55.5 NC_006273.1 + 38648 0.67 0.952536
Target:  5'- aCGCGgggUGCGgCGCCGACGcgaacggCUCGu -3'
miRNA:   3'- aGCGUaagACGUgGCGGCUGCa------GAGC- -5'
29944 5' -55.5 NC_006273.1 + 42777 1.09 0.00572
Target:  5'- gUCGCAUUCUGCACCGCCGACGUCUCGu -3'
miRNA:   3'- -AGCGUAAGACGUGGCGGCUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 43150 0.71 0.814594
Target:  5'- cCGCGUUagGCACCGCgUGGCGUacCUCGg -3'
miRNA:   3'- aGCGUAAgaCGUGGCG-GCUGCA--GAGC- -5'
29944 5' -55.5 NC_006273.1 + 56349 0.66 0.966442
Target:  5'- -gGCAcgUUGCcagcugaaACCGCCGuCGUCUCc -3'
miRNA:   3'- agCGUaaGACG--------UGGCGGCuGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 60726 0.66 0.97478
Target:  5'- cCGUAUgcugUCaGCGCCGCUcaGACGaauUCUCGa -3'
miRNA:   3'- aGCGUA----AGaCGUGGCGG--CUGC---AGAGC- -5'
29944 5' -55.5 NC_006273.1 + 64758 0.66 0.966442
Target:  5'- gUUGCAaaagaagCUGC-CCGCCGGCGgg-CGg -3'
miRNA:   3'- -AGCGUaa-----GACGuGGCGGCUGCagaGC- -5'
29944 5' -55.5 NC_006273.1 + 64988 0.66 0.966442
Target:  5'- cUCGUug---GCGCgCGCCGugGUCUUc -3'
miRNA:   3'- -AGCGuaagaCGUG-GCGGCugCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 68001 0.66 0.972189
Target:  5'- aCGC--UCUGC-CCGgCGGCGUCa-- -3'
miRNA:   3'- aGCGuaAGACGuGGCgGCUGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 68208 0.67 0.959903
Target:  5'- cCGCGgccgCUGCGcCCGCCGugGcCa-- -3'
miRNA:   3'- aGCGUaa--GACGU-GGCGGCugCaGagc -5'
29944 5' -55.5 NC_006273.1 + 68530 0.66 0.969412
Target:  5'- cCGCGUUCUGgACUGCaucCGUC-CGg -3'
miRNA:   3'- aGCGUAAGACgUGGCGgcuGCAGaGC- -5'
29944 5' -55.5 NC_006273.1 + 71675 0.66 0.966442
Target:  5'- gCGCGccugCUGCacaaugugGCCGCCGACGUggCa -3'
miRNA:   3'- aGCGUaa--GACG--------UGGCGGCUGCAgaGc -5'
29944 5' -55.5 NC_006273.1 + 72396 0.69 0.896306
Target:  5'- cCGCAg-CUGcCGCCGUCGagccuccuccgcGCGUCUCGu -3'
miRNA:   3'- aGCGUaaGAC-GUGGCGGC------------UGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 72481 0.67 0.94431
Target:  5'- gUCGCAaaacgUCUGCACCGCU--UGUCg-- -3'
miRNA:   3'- -AGCGUa----AGACGUGGCGGcuGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 73101 0.73 0.714384
Target:  5'- aUGCAccagCUGCugcuggaggACCGCCGACGUCUgCGc -3'
miRNA:   3'- aGCGUaa--GACG---------UGGCGGCUGCAGA-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.