miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 5' -55.5 NC_006273.1 + 73139 0.68 0.935204
Target:  5'- cCGCAaaCUGCGCCGguggcugCGACGUUUCu -3'
miRNA:   3'- aGCGUaaGACGUGGCg------GCUGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 76435 0.81 0.318264
Target:  5'- gCGCGagCUGUACCGCCGcguCGUCUCGu -3'
miRNA:   3'- aGCGUaaGACGUGGCGGCu--GCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 86608 0.69 0.902527
Target:  5'- aCGCAcg--GCGCCGCCGcCGgcCUCGg -3'
miRNA:   3'- aGCGUaagaCGUGGCGGCuGCa-GAGC- -5'
29944 5' -55.5 NC_006273.1 + 94601 0.68 0.914311
Target:  5'- -gGCAaa-UGCACCucgucGCCGGCGUCaUCGa -3'
miRNA:   3'- agCGUaagACGUGG-----CGGCUGCAG-AGC- -5'
29944 5' -55.5 NC_006273.1 + 98939 0.69 0.902527
Target:  5'- aCGCAgUCcGCcCCGCCGACGgugaUUCGu -3'
miRNA:   3'- aGCGUaAGaCGuGGCGGCUGCa---GAGC- -5'
29944 5' -55.5 NC_006273.1 + 100370 0.68 0.930317
Target:  5'- aCGC-UUCUGCAgaUCGCaGACGUCgUCGc -3'
miRNA:   3'- aGCGuAAGACGU--GGCGgCUGCAG-AGC- -5'
29944 5' -55.5 NC_006273.1 + 118788 0.73 0.714384
Target:  5'- gUCGCGgacgcUCUGCAUCGCCGcaACGUgUCc -3'
miRNA:   3'- -AGCGUa----AGACGUGGCGGC--UGCAgAGc -5'
29944 5' -55.5 NC_006273.1 + 119398 0.66 0.969412
Target:  5'- cCGUGUUCgaugaaacgcGCGCCGCC--CGUCUCa -3'
miRNA:   3'- aGCGUAAGa---------CGUGGCGGcuGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 119428 0.69 0.902527
Target:  5'- -aGCAUUCUGgAuCUGCaCGAUGUaCUCGg -3'
miRNA:   3'- agCGUAAGACgU-GGCG-GCUGCA-GAGC- -5'
29944 5' -55.5 NC_006273.1 + 120189 0.67 0.954078
Target:  5'- gUCGCGUcggcguaacaacggCUGgaggacuuuuuCACCGCCucggcGACGUCUCGg -3'
miRNA:   3'- -AGCGUAa-------------GAC-----------GUGGCGG-----CUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 120938 0.67 0.939412
Target:  5'- cUCGcCAUg--GCGCCGCCGccggugacgcgggGCGUCUUa -3'
miRNA:   3'- -AGC-GUAagaCGUGGCGGC-------------UGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 121640 0.68 0.930317
Target:  5'- cUGCAUgagCacgGCGCCGCCGcCGUCg-- -3'
miRNA:   3'- aGCGUAa--Ga--CGUGGCGGCuGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 123168 0.66 0.97478
Target:  5'- gCGCAU--UGcCACCGCCG-CGUcCUCc -3'
miRNA:   3'- aGCGUAagAC-GUGGCGGCuGCA-GAGc -5'
29944 5' -55.5 NC_006273.1 + 131062 0.67 0.961276
Target:  5'- -gGCAgcagCUGCGCCGggccuaucaggaacaCCGACGUCg-- -3'
miRNA:   3'- agCGUaa--GACGUGGC---------------GGCUGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 131695 0.67 0.956325
Target:  5'- aCGCGcgaaccggguuUUCUGgGCCGCCGGC-UUUCc -3'
miRNA:   3'- aGCGU-----------AAGACgUGGCGGCUGcAGAGc -5'
29944 5' -55.5 NC_006273.1 + 132362 0.69 0.876362
Target:  5'- cCGCGgccgCUGcCGCCG-CGGCGUUUCGu -3'
miRNA:   3'- aGCGUaa--GAC-GUGGCgGCUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 133092 0.68 0.925205
Target:  5'- cCGCGUUgcccCUGuCACCGCCGccacGCGUCa-- -3'
miRNA:   3'- aGCGUAA----GAC-GUGGCGGC----UGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 133581 0.67 0.956325
Target:  5'- cUCGU-UUCUGCcgaUGCCGGCGUCagUCGc -3'
miRNA:   3'- -AGCGuAAGACGug-GCGGCUGCAG--AGC- -5'
29944 5' -55.5 NC_006273.1 + 134380 0.74 0.642794
Target:  5'- -gGUGUUCUGCgagauuuuauugguACCGCCGAUGaUCUCGu -3'
miRNA:   3'- agCGUAAGACG--------------UGGCGGCUGC-AGAGC- -5'
29944 5' -55.5 NC_006273.1 + 139877 0.69 0.896306
Target:  5'- gCGCAgUCUccgGCCGCCGAUuUCUCGg -3'
miRNA:   3'- aGCGUaAGAcg-UGGCGGCUGcAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.