miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 5' -55.5 NC_006273.1 + 233540 0.67 0.952536
Target:  5'- aCGCGgggUGCGgCGCCGACGcgaacggCUCGu -3'
miRNA:   3'- aGCGUaagACGUgGCGGCUGCa------GAGC- -5'
29944 5' -55.5 NC_006273.1 + 233271 0.69 0.894397
Target:  5'- cCGCGUUUgGCAcgcaaaucgcgcucCCGCCGGCGcCUCc -3'
miRNA:   3'- aGCGUAAGaCGU--------------GGCGGCUGCaGAGc -5'
29944 5' -55.5 NC_006273.1 + 233217 0.68 0.935204
Target:  5'- cCGCug-CUGCcgcuGCCGCCGcCGUCgCGu -3'
miRNA:   3'- aGCGuaaGACG----UGGCGGCuGCAGaGC- -5'
29944 5' -55.5 NC_006273.1 + 229129 0.69 0.88322
Target:  5'- gCGCuggUUGUuucGCCGCCGGCGagCUCGa -3'
miRNA:   3'- aGCGuaaGACG---UGGCGGCUGCa-GAGC- -5'
29944 5' -55.5 NC_006273.1 + 227741 0.66 0.973248
Target:  5'- aUCGCAgcugUCUuCGCCGCCGcagcuguagcaguuaACGUCgcCGg -3'
miRNA:   3'- -AGCGUa---AGAcGUGGCGGC---------------UGCAGa-GC- -5'
29944 5' -55.5 NC_006273.1 + 219078 0.71 0.797464
Target:  5'- uUCGCA-UCgGuCACCGUCGAUGUCgUCGu -3'
miRNA:   3'- -AGCGUaAGaC-GUGGCGGCUGCAG-AGC- -5'
29944 5' -55.5 NC_006273.1 + 214844 0.66 0.966134
Target:  5'- gCGCGUUagccucCUGCGCCuGCaugguggCGACgGUCUCGg -3'
miRNA:   3'- aGCGUAA------GACGUGG-CG-------GCUG-CAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 213712 0.75 0.596283
Target:  5'- gCGCAggUCgUGCACgucggccaccagCGCCGugGUCUCGg -3'
miRNA:   3'- aGCGUa-AG-ACGUG------------GCGGCugCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 213073 0.7 0.846936
Target:  5'- -gGCGUUCguugGCGCCGCUGccGCGUCg-- -3'
miRNA:   3'- agCGUAAGa---CGUGGCGGC--UGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 204606 0.69 0.907939
Target:  5'- cCGCugcugCUGUuaucgucgccaccGCCGCCGGCGccguUCUCGg -3'
miRNA:   3'- aGCGuaa--GACG-------------UGGCGGCUGC----AGAGC- -5'
29944 5' -55.5 NC_006273.1 + 201967 0.66 0.969412
Target:  5'- gUCGC-----GCGCCGCCGACGcC-CGa -3'
miRNA:   3'- -AGCGuaagaCGUGGCGGCUGCaGaGC- -5'
29944 5' -55.5 NC_006273.1 + 200975 0.69 0.889869
Target:  5'- gCGguUUC-GcCACCGCUGACGuUCUCa -3'
miRNA:   3'- aGCguAAGaC-GUGGCGGCUGC-AGAGc -5'
29944 5' -55.5 NC_006273.1 + 198812 0.66 0.966134
Target:  5'- -aGCAUUCccuagUGCugCGCaCGGCGcgcgaucuggggcUCUCGg -3'
miRNA:   3'- agCGUAAG-----ACGugGCG-GCUGC-------------AGAGC- -5'
29944 5' -55.5 NC_006273.1 + 197245 0.68 0.935204
Target:  5'- gUCGCAcuUUCUGCG-CGCgGGCGUgCUgGg -3'
miRNA:   3'- -AGCGU--AAGACGUgGCGgCUGCA-GAgC- -5'
29944 5' -55.5 NC_006273.1 + 194979 0.66 0.97478
Target:  5'- gCGUAUcgaaUGCGCCGCCuGugGcCUCc -3'
miRNA:   3'- aGCGUAag--ACGUGGCGG-CugCaGAGc -5'
29944 5' -55.5 NC_006273.1 + 188189 0.66 0.966442
Target:  5'- cUCGCcgUCUGCuucucuGCCGCuCGugGUgC-CGa -3'
miRNA:   3'- -AGCGuaAGACG------UGGCG-GCugCA-GaGC- -5'
29944 5' -55.5 NC_006273.1 + 186747 0.67 0.939868
Target:  5'- cCGCug-CgUGCGCCGaCGGCGUUUCa -3'
miRNA:   3'- aGCGuaaG-ACGUGGCgGCUGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 174157 0.72 0.733521
Target:  5'- cCGCAUcugCUGCACCGCCGc---CUCGa -3'
miRNA:   3'- aGCGUAa--GACGUGGCGGCugcaGAGC- -5'
29944 5' -55.5 NC_006273.1 + 174055 0.72 0.779773
Target:  5'- -gGCAUUC-GCGCCuCCaACGUCUCGg -3'
miRNA:   3'- agCGUAAGaCGUGGcGGcUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 173550 0.66 0.966442
Target:  5'- gCGCcgUCUGUACCGUggCGugG-CUUa -3'
miRNA:   3'- aGCGuaAGACGUGGCG--GCugCaGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.