miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 5' -55.5 NC_006273.1 + 233540 0.67 0.952536
Target:  5'- aCGCGgggUGCGgCGCCGACGcgaacggCUCGu -3'
miRNA:   3'- aGCGUaagACGUgGCGGCUGCa------GAGC- -5'
29944 5' -55.5 NC_006273.1 + 119428 0.69 0.902527
Target:  5'- -aGCAUUCUGgAuCUGCaCGAUGUaCUCGg -3'
miRNA:   3'- agCGUAAGACgU-GGCG-GCUGCA-GAGC- -5'
29944 5' -55.5 NC_006273.1 + 100370 0.68 0.930317
Target:  5'- aCGC-UUCUGCAgaUCGCaGACGUCgUCGc -3'
miRNA:   3'- aGCGuAAGACGU--GGCGgCUGCAG-AGC- -5'
29944 5' -55.5 NC_006273.1 + 73139 0.68 0.935204
Target:  5'- cCGCAaaCUGCGCCGguggcugCGACGUUUCu -3'
miRNA:   3'- aGCGUaaGACGUGGCg------GCUGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 142270 0.68 0.935204
Target:  5'- cCGCAccCcGCugUGCCGACGUCgugUGg -3'
miRNA:   3'- aGCGUaaGaCGugGCGGCUGCAGa--GC- -5'
29944 5' -55.5 NC_006273.1 + 197245 0.68 0.935204
Target:  5'- gUCGCAcuUUCUGCG-CGCgGGCGUgCUgGg -3'
miRNA:   3'- -AGCGU--AAGACGUgGCGgCUGCA-GAgC- -5'
29944 5' -55.5 NC_006273.1 + 233217 0.68 0.935204
Target:  5'- cCGCug-CUGCcgcuGCCGCCGcCGUCgCGu -3'
miRNA:   3'- aGCGuaaGACG----UGGCGGCuGCAGaGC- -5'
29944 5' -55.5 NC_006273.1 + 120938 0.67 0.939412
Target:  5'- cUCGcCAUg--GCGCCGCCGccggugacgcgggGCGUCUUa -3'
miRNA:   3'- -AGC-GUAagaCGUGGCGGC-------------UGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 72481 0.67 0.94431
Target:  5'- gUCGCAaaacgUCUGCACCGCU--UGUCg-- -3'
miRNA:   3'- -AGCGUa----AGACGUGGCGGcuGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 72396 0.69 0.896306
Target:  5'- cCGCAg-CUGcCGCCGUCGagccuccuccgcGCGUCUCGu -3'
miRNA:   3'- aGCGUaaGAC-GUGGCGGC------------UGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 139877 0.69 0.896306
Target:  5'- gCGCAgUCUccgGCCGCCGAUuUCUCGg -3'
miRNA:   3'- aGCGUaAGAcg-UGGCGGCUGcAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 233271 0.69 0.894397
Target:  5'- cCGCGUUUgGCAcgcaaaucgcgcucCCGCCGGCGcCUCc -3'
miRNA:   3'- aGCGUAAGaCGU--------------GGCGGCUGCaGAGc -5'
29944 5' -55.5 NC_006273.1 + 161732 0.76 0.528194
Target:  5'- cUCGCGcUUUGCGCCGCCG-CGUCa-- -3'
miRNA:   3'- -AGCGUaAGACGUGGCGGCuGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 134380 0.74 0.642794
Target:  5'- -gGUGUUCUGCgagauuuuauugguACCGCCGAUGaUCUCGu -3'
miRNA:   3'- agCGUAAGACG--------------UGGCGGCUGC-AGAGC- -5'
29944 5' -55.5 NC_006273.1 + 73101 0.73 0.714384
Target:  5'- aUGCAccagCUGCugcuggaggACCGCCGACGUCUgCGc -3'
miRNA:   3'- aGCGUaa--GACG---------UGGCGGCUGCAGA-GC- -5'
29944 5' -55.5 NC_006273.1 + 144455 0.72 0.779773
Target:  5'- cUCGCAcuacacgggCU-CGCgCGCCGGCGUCUCGc -3'
miRNA:   3'- -AGCGUaa-------GAcGUG-GCGGCUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 167039 0.7 0.846936
Target:  5'- uUUGCAg-CUGCACgGCCGugGagUCGu -3'
miRNA:   3'- -AGCGUaaGACGUGgCGGCugCagAGC- -5'
29944 5' -55.5 NC_006273.1 + 132362 0.69 0.876362
Target:  5'- cCGCGgccgCUGcCGCCG-CGGCGUUUCGu -3'
miRNA:   3'- aGCGUaa--GAC-GUGGCgGCUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 229129 0.69 0.88322
Target:  5'- gCGCuggUUGUuucGCCGCCGGCGagCUCGa -3'
miRNA:   3'- aGCGuaaGACG---UGGCGGCUGCa-GAGC- -5'
29944 5' -55.5 NC_006273.1 + 200975 0.69 0.889869
Target:  5'- gCGguUUC-GcCACCGCUGACGuUCUCa -3'
miRNA:   3'- aGCguAAGaC-GUGGCGGCUGC-AGAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.