miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29944 5' -55.5 NC_006273.1 + 42777 1.09 0.00572
Target:  5'- gUCGCAUUCUGCACCGCCGACGUCUCGu -3'
miRNA:   3'- -AGCGUAAGACGUGGCGGCUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 133092 0.68 0.925205
Target:  5'- cCGCGUUgcccCUGuCACCGCCGccacGCGUCa-- -3'
miRNA:   3'- aGCGUAA----GAC-GUGGCGGC----UGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 121640 0.68 0.930317
Target:  5'- cUGCAUgagCacgGCGCCGCCGcCGUCg-- -3'
miRNA:   3'- aGCGUAa--Ga--CGUGGCGGCuGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 194979 0.66 0.97478
Target:  5'- gCGUAUcgaaUGCGCCGCCuGugGcCUCc -3'
miRNA:   3'- aGCGUAag--ACGUGGCGG-CugCaGAGc -5'
29944 5' -55.5 NC_006273.1 + 174157 0.72 0.733521
Target:  5'- cCGCAUcugCUGCACCGCCGc---CUCGa -3'
miRNA:   3'- aGCGUAa--GACGUGGCGGCugcaGAGC- -5'
29944 5' -55.5 NC_006273.1 + 174055 0.72 0.779773
Target:  5'- -gGCAUUC-GCGCCuCCaACGUCUCGg -3'
miRNA:   3'- agCGUAAGaCGUGGcGGcUGCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 158759 0.71 0.806103
Target:  5'- gUCGCGccagUGCGCCGUCGACGccgCUCa -3'
miRNA:   3'- -AGCGUaag-ACGUGGCGGCUGCa--GAGc -5'
29944 5' -55.5 NC_006273.1 + 43150 0.71 0.814594
Target:  5'- cCGCGUUagGCACCGCgUGGCGUacCUCGg -3'
miRNA:   3'- aGCGUAAgaCGUGGCG-GCUGCA--GAGC- -5'
29944 5' -55.5 NC_006273.1 + 164438 0.7 0.8693
Target:  5'- gUCGUcgUCUGCgGCCGCgGcCG-CUCGa -3'
miRNA:   3'- -AGCGuaAGACG-UGGCGgCuGCaGAGC- -5'
29944 5' -55.5 NC_006273.1 + 94601 0.68 0.914311
Target:  5'- -gGCAaa-UGCACCucgucGCCGGCGUCaUCGa -3'
miRNA:   3'- agCGUaagACGUGG-----CGGCUGCAG-AGC- -5'
29944 5' -55.5 NC_006273.1 + 86608 0.69 0.902527
Target:  5'- aCGCAcg--GCGCCGCCGcCGgcCUCGg -3'
miRNA:   3'- aGCGUaagaCGUGGCGGCuGCa-GAGC- -5'
29944 5' -55.5 NC_006273.1 + 13071 0.7 0.862038
Target:  5'- aCGaagUCUcugGCACCGCCGAUGUCa-- -3'
miRNA:   3'- aGCguaAGA---CGUGGCGGCUGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 213712 0.75 0.596283
Target:  5'- gCGCAggUCgUGCACgucggccaccagCGCCGugGUCUCGg -3'
miRNA:   3'- aGCGUa-AG-ACGUG------------GCGGCugCAGAGC- -5'
29944 5' -55.5 NC_006273.1 + 98939 0.69 0.902527
Target:  5'- aCGCAgUCcGCcCCGCCGACGgugaUUCGu -3'
miRNA:   3'- aGCGUaAGaCGuGGCGGCUGCa---GAGC- -5'
29944 5' -55.5 NC_006273.1 + 155497 0.74 0.675388
Target:  5'- cUUGCAaUCUGCGCCGUccagucaggaCGGCGUUUCa -3'
miRNA:   3'- -AGCGUaAGACGUGGCG----------GCUGCAGAGc -5'
29944 5' -55.5 NC_006273.1 + 213073 0.7 0.846936
Target:  5'- -gGCGUUCguugGCGCCGCUGccGCGUCg-- -3'
miRNA:   3'- agCGUAAGa---CGUGGCGGC--UGCAGagc -5'
29944 5' -55.5 NC_006273.1 + 204606 0.69 0.907939
Target:  5'- cCGCugcugCUGUuaucgucgccaccGCCGCCGGCGccguUCUCGg -3'
miRNA:   3'- aGCGuaa--GACG-------------UGGCGGCUGC----AGAGC- -5'
29944 5' -55.5 NC_006273.1 + 169562 0.68 0.930317
Target:  5'- cCGCcugCUGCGCCGCCGAUug--CGg -3'
miRNA:   3'- aGCGuaaGACGUGGCGGCUGcagaGC- -5'
29944 5' -55.5 NC_006273.1 + 118788 0.73 0.714384
Target:  5'- gUCGCGgacgcUCUGCAUCGCCGcaACGUgUCc -3'
miRNA:   3'- -AGCGUa----AGACGUGGCGGC--UGCAgAGc -5'
29944 5' -55.5 NC_006273.1 + 219078 0.71 0.797464
Target:  5'- uUCGCA-UCgGuCACCGUCGAUGUCgUCGu -3'
miRNA:   3'- -AGCGUaAGaC-GUGGCGGCUGCAG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.