miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 3' -55.7 NC_006273.1 + 73886 0.66 0.967136
Target:  5'- uGCGGGCgCGCcAcagagauggaccACUGCCGCUGUGaCUg -3'
miRNA:   3'- -CGUCUG-GCGuU------------UGACGGUGGCGCaGA- -5'
29945 3' -55.7 NC_006273.1 + 8084 0.66 0.967136
Target:  5'- aGUGGACgGCGAuaAC-GCCA-CGCGUCg -3'
miRNA:   3'- -CGUCUGgCGUU--UGaCGGUgGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 218393 0.66 0.967136
Target:  5'- aCAGAgCCaGCgAAACUGCCGCgCGUaGUCg -3'
miRNA:   3'- cGUCU-GG-CG-UUUGACGGUG-GCG-CAGa -5'
29945 3' -55.7 NC_006273.1 + 44443 0.66 0.967136
Target:  5'- gGCAGuguuuCCGCGGccaguuGCUGgaCCGCCGCG-CUu -3'
miRNA:   3'- -CGUCu----GGCGUU------UGAC--GGUGGCGCaGA- -5'
29945 3' -55.7 NC_006273.1 + 233859 0.66 0.967136
Target:  5'- gGCGGGCCugugcGCAAGCagcguaGuCCGCgGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUUUGa-----C-GGUGgCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 14108 0.66 0.96683
Target:  5'- uCGGACCGCcGGCUGUuucugcgCACCG-GUCc -3'
miRNA:   3'- cGUCUGGCGuUUGACG-------GUGGCgCAGa -5'
29945 3' -55.7 NC_006273.1 + 71927 0.66 0.963988
Target:  5'- cGguGAUCGUAcACgGCacaaGCCGCGUUg -3'
miRNA:   3'- -CguCUGGCGUuUGaCGg---UGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 779 0.66 0.963988
Target:  5'- cGCuuuGugCGC--ACUGCCGuuGCGUg- -3'
miRNA:   3'- -CGu--CugGCGuuUGACGGUggCGCAga -5'
29945 3' -55.7 NC_006273.1 + 102997 0.66 0.963988
Target:  5'- cCAGACCGgAGAC-GCCGUCGCG-Ca -3'
miRNA:   3'- cGUCUGGCgUUUGaCGGUGGCGCaGa -5'
29945 3' -55.7 NC_006273.1 + 40717 0.66 0.963988
Target:  5'- cGCuuuGugCGC--ACUGCCGuuGCGUg- -3'
miRNA:   3'- -CGu--CugGCGuuUGACGGUggCGCAga -5'
29945 3' -55.7 NC_006273.1 + 90819 0.66 0.963988
Target:  5'- aGCAGACCG-AGGCcGUCGCgcaccggcuCGCGUCc -3'
miRNA:   3'- -CGUCUGGCgUUUGaCGGUG---------GCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 72310 0.66 0.963988
Target:  5'- cGCAGccGCCGCcguc-GCCGCCGCcUCg -3'
miRNA:   3'- -CGUC--UGGCGuuugaCGGUGGCGcAGa -5'
29945 3' -55.7 NC_006273.1 + 79035 0.66 0.963988
Target:  5'- cGUAGugCGcCAGGCUgggcccacgcGCCACCagagccugcgGCGUCa -3'
miRNA:   3'- -CGUCugGC-GUUUGA----------CGGUGG----------CGCAGa -5'
29945 3' -55.7 NC_006273.1 + 96439 0.66 0.963004
Target:  5'- cGCAGAccuCCaucgacaucuuuaaGCAGAaaGCCACCGUGUUc -3'
miRNA:   3'- -CGUCU---GG--------------CGUUUgaCGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 147842 0.66 0.963004
Target:  5'- uUAGcGCCGCGgcaccagagacagaGACcGCCGCCGCG-CUg -3'
miRNA:   3'- cGUC-UGGCGU--------------UUGaCGGUGGCGCaGA- -5'
29945 3' -55.7 NC_006273.1 + 143991 0.66 0.960636
Target:  5'- gGCuu-CCGUAAuCUGCCcuuuacgguGCUGCGUCUg -3'
miRNA:   3'- -CGucuGGCGUUuGACGG---------UGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 139191 0.66 0.960636
Target:  5'- uGCGGAUCGCGguagAGCUcgGUCAaCGCGUCc -3'
miRNA:   3'- -CGUCUGGCGU----UUGA--CGGUgGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 46327 0.66 0.960636
Target:  5'- aGCGG-CCGCcuAC-GCCGCCG-GUCc -3'
miRNA:   3'- -CGUCuGGCGuuUGaCGGUGGCgCAGa -5'
29945 3' -55.7 NC_006273.1 + 72599 0.66 0.960636
Target:  5'- gGCAgcGACaUGCGGccGCUGCCGCCGCc--- -3'
miRNA:   3'- -CGU--CUG-GCGUU--UGACGGUGGCGcaga -5'
29945 3' -55.7 NC_006273.1 + 173350 0.66 0.960636
Target:  5'- cGCc-GCCGCGG--UGCCGCCGC-UCUg -3'
miRNA:   3'- -CGucUGGCGUUugACGGUGGCGcAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.