miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 3' -55.7 NC_006273.1 + 779 0.66 0.963988
Target:  5'- cGCuuuGugCGC--ACUGCCGuuGCGUg- -3'
miRNA:   3'- -CGu--CugGCGuuUGACGGUggCGCAga -5'
29945 3' -55.7 NC_006273.1 + 73886 0.66 0.967136
Target:  5'- uGCGGGCgCGCcAcagagauggaccACUGCCGCUGUGaCUg -3'
miRNA:   3'- -CGUCUG-GCGuU------------UGACGGUGGCGCaGA- -5'
29945 3' -55.7 NC_006273.1 + 138035 0.66 0.949305
Target:  5'- gGCGGcGCCgGCGccuGGUUGCUGCCGCGUCc -3'
miRNA:   3'- -CGUC-UGG-CGU---UUGACGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 71927 0.66 0.963988
Target:  5'- cGguGAUCGUAcACgGCacaaGCCGCGUUg -3'
miRNA:   3'- -CguCUGGCGUuUGaCGg---UGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 193219 0.66 0.953298
Target:  5'- aGCAGcuACCGCuGGCgGCgGCgGCGUUa -3'
miRNA:   3'- -CGUC--UGGCGuUUGaCGgUGgCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 112416 0.66 0.953298
Target:  5'- ---cGCCGCGGacGCUGCuacaacCACCGUGUCg -3'
miRNA:   3'- cgucUGGCGUU--UGACG------GUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 143991 0.66 0.960636
Target:  5'- gGCuu-CCGUAAuCUGCCcuuuacgguGCUGCGUCUg -3'
miRNA:   3'- -CGucuGGCGUUuGACGG---------UGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 103970 0.66 0.948893
Target:  5'- aGCAGACgCGCGAACUcGCCcauggagGCgUGCGUg- -3'
miRNA:   3'- -CGUCUG-GCGUUUGA-CGG-------UG-GCGCAga -5'
29945 3' -55.7 NC_006273.1 + 112540 0.66 0.953298
Target:  5'- ---cGCCGCcccgucuGACgcgGUCGCCGCGUCa -3'
miRNA:   3'- cgucUGGCGu------UUGa--CGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 139191 0.66 0.960636
Target:  5'- uGCGGAUCGCGguagAGCUcgGUCAaCGCGUCc -3'
miRNA:   3'- -CGUCUGGCGU----UUGA--CGGUgGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 218393 0.66 0.967136
Target:  5'- aCAGAgCCaGCgAAACUGCCGCgCGUaGUCg -3'
miRNA:   3'- cGUCU-GG-CG-UUUGACGGUG-GCG-CAGa -5'
29945 3' -55.7 NC_006273.1 + 122166 0.66 0.949305
Target:  5'- cGUAGcCCgGCAAauGCUGaagaaCGCCGCGUUUg -3'
miRNA:   3'- -CGUCuGG-CGUU--UGACg----GUGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 102997 0.66 0.963988
Target:  5'- cCAGACCGgAGAC-GCCGUCGCG-Ca -3'
miRNA:   3'- cGUCUGGCgUUUGaCGGUGGCGCaGa -5'
29945 3' -55.7 NC_006273.1 + 79035 0.66 0.963988
Target:  5'- cGUAGugCGcCAGGCUgggcccacgcGCCACCagagccugcgGCGUCa -3'
miRNA:   3'- -CGUCugGC-GUUUGA----------CGGUGG----------CGCAGa -5'
29945 3' -55.7 NC_006273.1 + 116607 0.66 0.957074
Target:  5'- uGCAGAgcguCCGCGAcggucuuuuUUGCCuggGCUGCGUCa -3'
miRNA:   3'- -CGUCU----GGCGUUu--------GACGG---UGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 44443 0.66 0.967136
Target:  5'- gGCAGuguuuCCGCGGccaguuGCUGgaCCGCCGCG-CUu -3'
miRNA:   3'- -CGUCu----GGCGUU------UGAC--GGUGGCGCaGA- -5'
29945 3' -55.7 NC_006273.1 + 233859 0.66 0.967136
Target:  5'- gGCGGGCCugugcGCAAGCagcguaGuCCGCgGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUUUGa-----C-GGUGgCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 71838 0.66 0.949305
Target:  5'- cGCAGGagaCGCgGGACcGCaCGCCGCGUa- -3'
miRNA:   3'- -CGUCUg--GCG-UUUGaCG-GUGGCGCAga -5'
29945 3' -55.7 NC_006273.1 + 104267 0.66 0.957074
Target:  5'- aCGGGCgUGCGGAagagaUGCCgguagagcgGCCGCGUCUc -3'
miRNA:   3'- cGUCUG-GCGUUUg----ACGG---------UGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 210442 0.66 0.949305
Target:  5'- aGCAG-CCGCAGGg-GCCaaguccaggGCCGCGUg- -3'
miRNA:   3'- -CGUCuGGCGUUUgaCGG---------UGGCGCAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.