miRNA display CGI


Results 21 - 40 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 3' -55.7 NC_006273.1 + 101615 0.66 0.957074
Target:  5'- aGCAGAUU-CAGAacCUG-CACCGCGUCa -3'
miRNA:   3'- -CGUCUGGcGUUU--GACgGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 46327 0.66 0.960636
Target:  5'- aGCGG-CCGCcuAC-GCCGCCG-GUCc -3'
miRNA:   3'- -CGUCuGGCGuuUGaCGGUGGCgCAGa -5'
29945 3' -55.7 NC_006273.1 + 90819 0.66 0.963988
Target:  5'- aGCAGACCG-AGGCcGUCGCgcaccggcuCGCGUCc -3'
miRNA:   3'- -CGUCUGGCgUUUGaCGGUG---------GCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 213070 0.66 0.957074
Target:  5'- cGCGGcguUCGUuGGCgccGCUGCCGCGUCg -3'
miRNA:   3'- -CGUCu--GGCGuUUGa--CGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 110925 0.66 0.953298
Target:  5'- gGCuGGACCGCGAGCgcagcgucgGCgaGCCGCG-Ca -3'
miRNA:   3'- -CG-UCUGGCGUUUGa--------CGg-UGGCGCaGa -5'
29945 3' -55.7 NC_006273.1 + 40717 0.66 0.963988
Target:  5'- cGCuuuGugCGC--ACUGCCGuuGCGUg- -3'
miRNA:   3'- -CGu--CugGCGuuUGACGGUggCGCAga -5'
29945 3' -55.7 NC_006273.1 + 157149 0.66 0.960289
Target:  5'- -aAGGCUGUAAccaacguGCUGUCGCC-CGUCUu -3'
miRNA:   3'- cgUCUGGCGUU-------UGACGGUGGcGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 122166 0.66 0.949305
Target:  5'- cGUAGcCCgGCAAauGCUGaagaaCGCCGCGUUUg -3'
miRNA:   3'- -CGUCuGG-CGUU--UGACg----GUGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 779 0.66 0.963988
Target:  5'- cGCuuuGugCGC--ACUGCCGuuGCGUg- -3'
miRNA:   3'- -CGu--CugGCGuuUGACGGUggCGCAga -5'
29945 3' -55.7 NC_006273.1 + 102997 0.66 0.963988
Target:  5'- cCAGACCGgAGAC-GCCGUCGCG-Ca -3'
miRNA:   3'- cGUCUGGCgUUUGaCGGUGGCGCaGa -5'
29945 3' -55.7 NC_006273.1 + 14108 0.66 0.96683
Target:  5'- uCGGACCGCcGGCUGUuucugcgCACCG-GUCc -3'
miRNA:   3'- cGUCUGGCGuUUGACG-------GUGGCgCAGa -5'
29945 3' -55.7 NC_006273.1 + 147842 0.66 0.963004
Target:  5'- uUAGcGCCGCGgcaccagagacagaGACcGCCGCCGCG-CUg -3'
miRNA:   3'- cGUC-UGGCGU--------------UUGaCGGUGGCGCaGA- -5'
29945 3' -55.7 NC_006273.1 + 173350 0.66 0.960636
Target:  5'- cGCc-GCCGCGG--UGCCGCCGC-UCUg -3'
miRNA:   3'- -CGucUGGCGUUugACGGUGGCGcAGA- -5'
29945 3' -55.7 NC_006273.1 + 58420 0.66 0.957074
Target:  5'- aGCAGACC--AAGCUGCUACgcuuCGuCGUCa -3'
miRNA:   3'- -CGUCUGGcgUUUGACGGUG----GC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 233859 0.66 0.967136
Target:  5'- gGCGGGCCugugcGCAAGCagcguaGuCCGCgGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUUUGa-----C-GGUGgCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 16769 0.66 0.957074
Target:  5'- -uGGACCGCucGCcGCC-CCugcaGCGUCUa -3'
miRNA:   3'- cgUCUGGCGuuUGaCGGuGG----CGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 133250 0.66 0.949305
Target:  5'- gGC-GACgGCGccACUGCCGCUGCGa-- -3'
miRNA:   3'- -CGuCUGgCGUu-UGACGGUGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 96439 0.66 0.963004
Target:  5'- cGCAGAccuCCaucgacaucuuuaaGCAGAaaGCCACCGUGUUc -3'
miRNA:   3'- -CGUCU---GG--------------CGUUUgaCGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 8084 0.66 0.967136
Target:  5'- aGUGGACgGCGAuaAC-GCCA-CGCGUCg -3'
miRNA:   3'- -CGUCUGgCGUU--UGaCGGUgGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 31207 0.66 0.957074
Target:  5'- cCAGGCUGCccuGGUUGCCGCUGCGg-- -3'
miRNA:   3'- cGUCUGGCGu--UUGACGGUGGCGCaga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.