miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 3' -55.7 NC_006273.1 + 99358 0.73 0.654584
Target:  5'- cGCGGcCCGCGGAUcgGCCAgCGCuGUCUa -3'
miRNA:   3'- -CGUCuGGCGUUUGa-CGGUgGCG-CAGA- -5'
29945 3' -55.7 NC_006273.1 + 40210 0.73 0.674473
Target:  5'- cGCGGGCCccgggGCAcACUGCaCAacCCGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUuUGACG-GU--GGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 141138 0.73 0.674473
Target:  5'- uGCGGACCGCAGcACgGCCggaacccuGCCGCGg-- -3'
miRNA:   3'- -CGUCUGGCGUU-UGaCGG--------UGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 235103 0.73 0.674473
Target:  5'- cGCGGGCCccgggGCAcACUGCaCAacCCGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUuUGACG-GU--GGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 272 0.73 0.674473
Target:  5'- cGCGGGCCccgggGCAcACUGCaCAacCCGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUuUGACG-GU--GGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 102584 0.73 0.694229
Target:  5'- -gGGGCCGguG-CUGCCGCCGuCGUUg -3'
miRNA:   3'- cgUCUGGCguUuGACGGUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 166408 0.72 0.704038
Target:  5'- cGCAGAUCGCGgaucuuuuccAACUGCgACCGaaaGUCc -3'
miRNA:   3'- -CGUCUGGCGU----------UUGACGgUGGCg--CAGa -5'
29945 3' -55.7 NC_006273.1 + 122201 0.72 0.704038
Target:  5'- gGC-GACCGCGcgacuccauGCUGCCugCGCGUa- -3'
miRNA:   3'- -CGuCUGGCGUu--------UGACGGugGCGCAga -5'
29945 3' -55.7 NC_006273.1 + 100377 0.72 0.704038
Target:  5'- uGCAGAUCGCAGAC-GUCGUCGCGUa- -3'
miRNA:   3'- -CGUCUGGCGUUUGaCGGUGGCGCAga -5'
29945 3' -55.7 NC_006273.1 + 68065 0.72 0.713789
Target:  5'- cGCcguGGCCGCc-GCUGCCGCCGCuGUg- -3'
miRNA:   3'- -CGu--CUGGCGuuUGACGGUGGCG-CAga -5'
29945 3' -55.7 NC_006273.1 + 72149 0.72 0.713789
Target:  5'- cGCGGACUGCGAggagGCUGaggCGCCGCGg-- -3'
miRNA:   3'- -CGUCUGGCGUU----UGACg--GUGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 42246 0.72 0.713789
Target:  5'- aGCAGGCCGCAcACgUGUcgacgaCACCGcCGUCg -3'
miRNA:   3'- -CGUCUGGCGUuUG-ACG------GUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 115908 0.72 0.723473
Target:  5'- gGCAGGCCGguGuggcGCUGCacaaAgCGCGUCa -3'
miRNA:   3'- -CGUCUGGCguU----UGACGg---UgGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 198111 0.72 0.733083
Target:  5'- -aGGGCUGCucGGCgGCCACgGCGUCUu -3'
miRNA:   3'- cgUCUGGCGu-UUGaCGGUGgCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 216969 0.72 0.733083
Target:  5'- cGCGGGCCGUcuuGGCcacgGCCGCaGCGUCa -3'
miRNA:   3'- -CGUCUGGCGu--UUGa---CGGUGgCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 38319 0.72 0.742609
Target:  5'- cGCc-GCCGCugcugccGCUGCCGCCGcCGUCg -3'
miRNA:   3'- -CGucUGGCGuu-----UGACGGUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 233212 0.72 0.742609
Target:  5'- cGCc-GCCGCugcugccGCUGCCGCCGcCGUCg -3'
miRNA:   3'- -CGucUGGCGuu-----UGACGGUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 43126 0.71 0.752044
Target:  5'- uGCAGACCGUAcggGugUGguaUACCGCGUUa -3'
miRNA:   3'- -CGUCUGGCGU---UugACg--GUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 210000 0.71 0.761378
Target:  5'- cCAGACUGCGggUcGCCAgCCGgGUCUc -3'
miRNA:   3'- cGUCUGGCGUuuGaCGGU-GGCgCAGA- -5'
29945 3' -55.7 NC_006273.1 + 141008 0.71 0.761378
Target:  5'- -aAGACUGCGccgcGGCUGUUACCGaCGUCa -3'
miRNA:   3'- cgUCUGGCGU----UUGACGGUGGC-GCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.