miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 3' -55.7 NC_006273.1 + 157149 0.66 0.960289
Target:  5'- -aAGGCUGUAAccaacguGCUGUCGCC-CGUCUu -3'
miRNA:   3'- cgUCUGGCGUU-------UGACGGUGGcGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 104267 0.66 0.957074
Target:  5'- aCGGGCgUGCGGAagagaUGCCgguagagcgGCCGCGUCUc -3'
miRNA:   3'- cGUCUG-GCGUUUg----ACGG---------UGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 58420 0.66 0.957074
Target:  5'- aGCAGACC--AAGCUGCUACgcuuCGuCGUCa -3'
miRNA:   3'- -CGUCUGGcgUUUGACGGUG----GC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 213070 0.66 0.957074
Target:  5'- cGCGGcguUCGUuGGCgccGCUGCCGCGUCg -3'
miRNA:   3'- -CGUCu--GGCGuUUGa--CGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 101615 0.66 0.957074
Target:  5'- aGCAGAUU-CAGAacCUG-CACCGCGUCa -3'
miRNA:   3'- -CGUCUGGcGUUU--GACgGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 31207 0.66 0.957074
Target:  5'- cCAGGCUGCccuGGUUGCCGCUGCGg-- -3'
miRNA:   3'- cGUCUGGCGu--UUGACGGUGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 16769 0.66 0.957074
Target:  5'- -uGGACCGCucGCcGCC-CCugcaGCGUCUa -3'
miRNA:   3'- cgUCUGGCGuuUGaCGGuGG----CGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 116607 0.66 0.957074
Target:  5'- uGCAGAgcguCCGCGAcggucuuuuUUGCCuggGCUGCGUCa -3'
miRNA:   3'- -CGUCU----GGCGUUu--------GACGG---UGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 110925 0.66 0.953298
Target:  5'- gGCuGGACCGCGAGCgcagcgucgGCgaGCCGCG-Ca -3'
miRNA:   3'- -CG-UCUGGCGUUUGa--------CGg-UGGCGCaGa -5'
29945 3' -55.7 NC_006273.1 + 193219 0.66 0.953298
Target:  5'- aGCAGcuACCGCuGGCgGCgGCgGCGUUa -3'
miRNA:   3'- -CGUC--UGGCGuUUGaCGgUGgCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 112540 0.66 0.953298
Target:  5'- ---cGCCGCcccgucuGACgcgGUCGCCGCGUCa -3'
miRNA:   3'- cgucUGGCGu------UUGa--CGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 112416 0.66 0.953298
Target:  5'- ---cGCCGCGGacGCUGCuacaacCACCGUGUCg -3'
miRNA:   3'- cgucUGGCGUU--UGACG------GUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 26326 0.66 0.953298
Target:  5'- uCGGACCGCGAuc-GUCAUgCGUGUCUa -3'
miRNA:   3'- cGUCUGGCGUUugaCGGUG-GCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 73692 0.66 0.953298
Target:  5'- cGgAGGCCGUGgagcGAgUGCCGCCGCa--- -3'
miRNA:   3'- -CgUCUGGCGU----UUgACGGUGGCGcaga -5'
29945 3' -55.7 NC_006273.1 + 122166 0.66 0.949305
Target:  5'- cGUAGcCCgGCAAauGCUGaagaaCGCCGCGUUUg -3'
miRNA:   3'- -CGUCuGG-CGUU--UGACg----GUGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 133250 0.66 0.949305
Target:  5'- gGC-GACgGCGccACUGCCGCUGCGa-- -3'
miRNA:   3'- -CGuCUGgCGUu-UGACGGUGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 56965 0.66 0.949305
Target:  5'- aCAGACCGUugcGGCUgGCCACguacaacagCGUGUCg -3'
miRNA:   3'- cGUCUGGCGu--UUGA-CGGUG---------GCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 138035 0.66 0.949305
Target:  5'- gGCGGcGCCgGCGccuGGUUGCUGCCGCGUCc -3'
miRNA:   3'- -CGUC-UGG-CGU---UUGACGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 71838 0.66 0.949305
Target:  5'- cGCAGGagaCGCgGGACcGCaCGCCGCGUa- -3'
miRNA:   3'- -CGUCUg--GCG-UUUGaCG-GUGGCGCAga -5'
29945 3' -55.7 NC_006273.1 + 210442 0.66 0.949305
Target:  5'- aGCAG-CCGCAGGg-GCCaaguccaggGCCGCGUg- -3'
miRNA:   3'- -CGUCuGGCGUUUgaCGG---------UGGCGCAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.