miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 3' -55.7 NC_006273.1 + 103970 0.66 0.948893
Target:  5'- aGCAGACgCGCGAACUcGCCcauggagGCgUGCGUg- -3'
miRNA:   3'- -CGUCUG-GCGUUUGA-CGG-------UG-GCGCAga -5'
29945 3' -55.7 NC_006273.1 + 215222 0.67 0.946803
Target:  5'- uGCAGugUGUGGugauucggcacguuCUGCguCCGCGUCUc -3'
miRNA:   3'- -CGUCugGCGUUu-------------GACGguGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 111773 0.67 0.94509
Target:  5'- cGCAG-CC-CAGGCUGCCAuaucCUGCGcUCg -3'
miRNA:   3'- -CGUCuGGcGUUUGACGGU----GGCGC-AGa -5'
29945 3' -55.7 NC_006273.1 + 198145 0.67 0.94509
Target:  5'- --cGACCGCcaAGACcGCCACCGCc--- -3'
miRNA:   3'- cguCUGGCG--UUUGaCGGUGGCGcaga -5'
29945 3' -55.7 NC_006273.1 + 32673 0.67 0.94509
Target:  5'- cGCAGGCC-CGAGCgguUGCCGugaCGCaGUCUg -3'
miRNA:   3'- -CGUCUGGcGUUUG---ACGGUg--GCG-CAGA- -5'
29945 3' -55.7 NC_006273.1 + 202621 0.67 0.94509
Target:  5'- uGCGcGCCGCcGACUcGCUGCCGCaGUUg -3'
miRNA:   3'- -CGUcUGGCGuUUGA-CGGUGGCG-CAGa -5'
29945 3' -55.7 NC_006273.1 + 145320 0.67 0.944221
Target:  5'- aGCGGAucgauuuCCGCGAcCUGCCuACCGUcuaccugGUCUc -3'
miRNA:   3'- -CGUCU-------GGCGUUuGACGG-UGGCG-------CAGA- -5'
29945 3' -55.7 NC_006273.1 + 202042 0.67 0.940653
Target:  5'- cGCAgGAUCGCAcGCgGCUGCCGCaGUUc -3'
miRNA:   3'- -CGU-CUGGCGUuUGaCGGUGGCG-CAGa -5'
29945 3' -55.7 NC_006273.1 + 76725 0.67 0.940653
Target:  5'- cGCAGugCGCcGGCaa-CAuCCGCGUCa -3'
miRNA:   3'- -CGUCugGCGuUUGacgGU-GGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 19964 0.67 0.940653
Target:  5'- uGCuuACCaGCGuGGCUGUCACgGCGUCa -3'
miRNA:   3'- -CGucUGG-CGU-UUGACGGUGgCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 147634 0.67 0.940653
Target:  5'- aGCAaacGCCGCGAcaACgGCCGCCGCa--- -3'
miRNA:   3'- -CGUc--UGGCGUU--UGaCGGUGGCGcaga -5'
29945 3' -55.7 NC_006273.1 + 89434 0.67 0.940653
Target:  5'- cGUAGGCCaGCAGcgGCUggaagGCCACgGCGUa- -3'
miRNA:   3'- -CGUCUGG-CGUU--UGA-----CGGUGgCGCAga -5'
29945 3' -55.7 NC_006273.1 + 72394 0.67 0.940653
Target:  5'- ---cGCCGC-AGCUGCCGCCGuCGa-- -3'
miRNA:   3'- cgucUGGCGuUUGACGGUGGC-GCaga -5'
29945 3' -55.7 NC_006273.1 + 107938 0.67 0.940197
Target:  5'- cGCAGuugcucuuucacuACCGCAAuCUggucGCCguGCUGCGUCUg -3'
miRNA:   3'- -CGUC-------------UGGCGUUuGA----CGG--UGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 118309 0.67 0.93599
Target:  5'- cCAGuuGCCGC---CUcGCUACCGCGUCg -3'
miRNA:   3'- cGUC--UGGCGuuuGA-CGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 61391 0.67 0.93599
Target:  5'- aGCAGuACuCGUu-GCUGCCGCgCGCGcCa -3'
miRNA:   3'- -CGUC-UG-GCGuuUGACGGUG-GCGCaGa -5'
29945 3' -55.7 NC_006273.1 + 151699 0.67 0.93599
Target:  5'- gGCGGuuguccuccaccGCCaGCGGACggaagGgCGCCGCGUCg -3'
miRNA:   3'- -CGUC------------UGG-CGUUUGa----CgGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 64691 0.67 0.934547
Target:  5'- uGCAGACCG-AGGCgcuggacGCCAUcauggaagagggcgCGCGUCUg -3'
miRNA:   3'- -CGUCUGGCgUUUGa------CGGUG--------------GCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 163915 0.67 0.931101
Target:  5'- aGgAGGCUGCGAuc-GCCGCCGCcUCg -3'
miRNA:   3'- -CgUCUGGCGUUugaCGGUGGCGcAGa -5'
29945 3' -55.7 NC_006273.1 + 69709 0.67 0.931101
Target:  5'- cGCAGACU-UGAugUGCCGCCGCc--- -3'
miRNA:   3'- -CGUCUGGcGUUugACGGUGGCGcaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.