miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 3' -55.7 NC_006273.1 + 272 0.73 0.674473
Target:  5'- cGCGGGCCccgggGCAcACUGCaCAacCCGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUuUGACG-GU--GGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 591 0.67 0.925984
Target:  5'- -uGGcGCCGCAAGCgcuCCGCCGCuUCUg -3'
miRNA:   3'- cgUC-UGGCGUUUGac-GGUGGCGcAGA- -5'
29945 3' -55.7 NC_006273.1 + 779 0.66 0.963988
Target:  5'- cGCuuuGugCGC--ACUGCCGuuGCGUg- -3'
miRNA:   3'- -CGu--CugGCGuuUGACGGUggCGCAga -5'
29945 3' -55.7 NC_006273.1 + 1364 0.74 0.624641
Target:  5'- aCGGACCuGCGucAGCUGUCGCCGCGg-- -3'
miRNA:   3'- cGUCUGG-CGU--UUGACGGUGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 2444 0.7 0.806244
Target:  5'- aGCuGGACCGCGAGCagugggaGCgGCCGCG-CUg -3'
miRNA:   3'- -CG-UCUGGCGUUUGa------CGgUGGCGCaGA- -5'
29945 3' -55.7 NC_006273.1 + 6175 0.68 0.915068
Target:  5'- cGUAGACUGCAGuuACUcucGUCACCGCuacUCUg -3'
miRNA:   3'- -CGUCUGGCGUU--UGA---CGGUGGCGc--AGA- -5'
29945 3' -55.7 NC_006273.1 + 7899 0.71 0.761378
Target:  5'- cGguGGCgGCGGACUGUCAgguauCCGCGUg- -3'
miRNA:   3'- -CguCUGgCGUUUGACGGU-----GGCGCAga -5'
29945 3' -55.7 NC_006273.1 + 8084 0.66 0.967136
Target:  5'- aGUGGACgGCGAuaAC-GCCA-CGCGUCg -3'
miRNA:   3'- -CGUCUGgCGUU--UGaCGGUgGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 11763 0.71 0.761378
Target:  5'- aCAGACCG-GAGCUGCCaACCGCa--- -3'
miRNA:   3'- cGUCUGGCgUUUGACGG-UGGCGcaga -5'
29945 3' -55.7 NC_006273.1 + 14108 0.66 0.96683
Target:  5'- uCGGACCGCcGGCUGUuucugcgCACCG-GUCc -3'
miRNA:   3'- cGUCUGGCGuUUGACG-------GUGGCgCAGa -5'
29945 3' -55.7 NC_006273.1 + 16409 0.69 0.85506
Target:  5'- cGCGGguACCGCAcgacgugguAGCgaUGCUGCUGCGUCa -3'
miRNA:   3'- -CGUC--UGGCGU---------UUG--ACGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 16769 0.66 0.957074
Target:  5'- -uGGACCGCucGCcGCC-CCugcaGCGUCUa -3'
miRNA:   3'- cgUCUGGCGuuUGaCGGuGG----CGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 18188 0.7 0.831428
Target:  5'- aGCAGG-CGCAggAACUGCC-CUGCGUg- -3'
miRNA:   3'- -CGUCUgGCGU--UUGACGGuGGCGCAga -5'
29945 3' -55.7 NC_006273.1 + 19964 0.67 0.940653
Target:  5'- uGCuuACCaGCGuGGCUGUCACgGCGUCa -3'
miRNA:   3'- -CGucUGG-CGU-UUGACGGUGgCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 21213 0.69 0.85506
Target:  5'- gGguGGCCG---GCUGCCGCCGCuGUg- -3'
miRNA:   3'- -CguCUGGCguuUGACGGUGGCG-CAga -5'
29945 3' -55.7 NC_006273.1 + 23132 0.68 0.92064
Target:  5'- cGUGGGCCGCuauGACUGUuuaCGCUGCGa-- -3'
miRNA:   3'- -CGUCUGGCGu--UUGACG---GUGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 26326 0.66 0.953298
Target:  5'- uCGGACCGCGAuc-GUCAUgCGUGUCUa -3'
miRNA:   3'- cGUCUGGCGUUugaCGGUG-GCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 28704 0.68 0.90927
Target:  5'- aCGGACgGCGAccuGCUGCgCACCGCu--- -3'
miRNA:   3'- cGUCUGgCGUU---UGACG-GUGGCGcaga -5'
29945 3' -55.7 NC_006273.1 + 31207 0.66 0.957074
Target:  5'- cCAGGCUGCccuGGUUGCCGCUGCGg-- -3'
miRNA:   3'- cGUCUGGCGu--UUGACGGUGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 32673 0.67 0.94509
Target:  5'- cGCAGGCC-CGAGCgguUGCCGugaCGCaGUCUg -3'
miRNA:   3'- -CGUCUGGcGUUUG---ACGGUg--GCG-CAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.