miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 3' -55.7 NC_006273.1 + 32745 0.69 0.8543
Target:  5'- aGCAGGCCGCGcuccagcAACUGCgGCaGCGa-- -3'
miRNA:   3'- -CGUCUGGCGU-------UUGACGgUGgCGCaga -5'
29945 3' -55.7 NC_006273.1 + 34868 0.74 0.593753
Target:  5'- aGCGGAUCGCGAaauaggcGCUcGUCACCGuCGUCa -3'
miRNA:   3'- -CGUCUGGCGUU-------UGA-CGGUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 36012 0.68 0.89054
Target:  5'- cGCAGACCGCGccagauGCUGCUGaacuugggcugcCCGCG-Ca -3'
miRNA:   3'- -CGUCUGGCGUu-----UGACGGU------------GGCGCaGa -5'
29945 3' -55.7 NC_006273.1 + 36874 0.67 0.928058
Target:  5'- cGCGGACCGCGGAgucggggagaagcucCUcGUCAuccuCCGUGUCg -3'
miRNA:   3'- -CGUCUGGCGUUU---------------GA-CGGU----GGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 37705 0.69 0.876966
Target:  5'- cGgAGAUCGUGcacaaagcAGCUGUCGCCGCGUa- -3'
miRNA:   3'- -CgUCUGGCGU--------UUGACGGUGGCGCAga -5'
29945 3' -55.7 NC_006273.1 + 38319 0.72 0.742609
Target:  5'- cGCc-GCCGCugcugccGCUGCCGCCGcCGUCg -3'
miRNA:   3'- -CGucUGGCGuu-----UGACGGUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 38442 0.7 0.823196
Target:  5'- aGCAGACCccacgGCuc-CUGCCAUCGCG-Ca -3'
miRNA:   3'- -CGUCUGG-----CGuuuGACGGUGGCGCaGa -5'
29945 3' -55.7 NC_006273.1 + 38693 0.8 0.30157
Target:  5'- cGCGGACCGCGAcaACUacgGCCGCUGCGUg- -3'
miRNA:   3'- -CGUCUGGCGUU--UGA---CGGUGGCGCAga -5'
29945 3' -55.7 NC_006273.1 + 39496 0.68 0.92064
Target:  5'- -gGGcACCGUGGccaccuccuuCUGUCACCGCGUCUc -3'
miRNA:   3'- cgUC-UGGCGUUu---------GACGGUGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 40210 0.73 0.674473
Target:  5'- cGCGGGCCccgggGCAcACUGCaCAacCCGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUuUGACG-GU--GGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 40529 0.67 0.925984
Target:  5'- -uGGcGCCGCAAGCgcuCCGCCGCuUCUg -3'
miRNA:   3'- cgUC-UGGCGUUUGac-GGUGGCGcAGA- -5'
29945 3' -55.7 NC_006273.1 + 40717 0.66 0.963988
Target:  5'- cGCuuuGugCGC--ACUGCCGuuGCGUg- -3'
miRNA:   3'- -CGu--CugGCGuuUGACGGUggCGCAga -5'
29945 3' -55.7 NC_006273.1 + 42246 0.72 0.713789
Target:  5'- aGCAGGCCGCAcACgUGUcgacgaCACCGcCGUCg -3'
miRNA:   3'- -CGUCUGGCGUuUG-ACG------GUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 42628 1.1 0.00385
Target:  5'- cGCAGACCGCAAACUGCCACCGCGUCUg -3'
miRNA:   3'- -CGUCUGGCGUUUGACGGUGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 43126 0.71 0.752044
Target:  5'- uGCAGACCGUAcggGugUGguaUACCGCGUUa -3'
miRNA:   3'- -CGUCUGGCGU---UugACg--GUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 43576 0.7 0.823196
Target:  5'- aGCAGcGCCGUAGGCaagUGCCGCgGCG-Cg -3'
miRNA:   3'- -CGUC-UGGCGUUUG---ACGGUGgCGCaGa -5'
29945 3' -55.7 NC_006273.1 + 44443 0.66 0.967136
Target:  5'- gGCAGuguuuCCGCGGccaguuGCUGgaCCGCCGCG-CUu -3'
miRNA:   3'- -CGUCu----GGCGUU------UGAC--GGUGGCGCaGA- -5'
29945 3' -55.7 NC_006273.1 + 45442 0.7 0.806244
Target:  5'- cGCcGGCCGaCGAGCUGCagacgGCUGUGUCg -3'
miRNA:   3'- -CGuCUGGC-GUUUGACGg----UGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 46327 0.66 0.960636
Target:  5'- aGCGG-CCGCcuAC-GCCGCCG-GUCc -3'
miRNA:   3'- -CGUCuGGCGuuUGaCGGUGGCgCAGa -5'
29945 3' -55.7 NC_006273.1 + 49640 0.68 0.911617
Target:  5'- uGCAGuCgCGCAggUcaucguagcaguagaUGCCGCCGCG-CUg -3'
miRNA:   3'- -CGUCuG-GCGUuuG---------------ACGGUGGCGCaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.