miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 3' -55.7 NC_006273.1 + 235103 0.73 0.674473
Target:  5'- cGCGGGCCccgggGCAcACUGCaCAacCCGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUuUGACG-GU--GGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 233859 0.66 0.967136
Target:  5'- gGCGGGCCugugcGCAAGCagcguaGuCCGCgGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUUUGa-----C-GGUGgCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 233335 0.7 0.823196
Target:  5'- aGCAGACCccacgGCuc-CUGCCAUCGCG-Ca -3'
miRNA:   3'- -CGUCUGG-----CGuuuGACGGUGGCGCaGa -5'
29945 3' -55.7 NC_006273.1 + 233212 0.72 0.742609
Target:  5'- cGCc-GCCGCugcugccGCUGCCGCCGcCGUCg -3'
miRNA:   3'- -CGucUGGCGuu-----UGACGGUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 230532 0.67 0.931101
Target:  5'- ---uGCCGCuguGCUGUCAgCCGCGUUg -3'
miRNA:   3'- cgucUGGCGuu-UGACGGU-GGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 227687 0.7 0.839487
Target:  5'- cGCu-GCCGCGGccACUGCCGCCGCc--- -3'
miRNA:   3'- -CGucUGGCGUU--UGACGGUGGCGcaga -5'
29945 3' -55.7 NC_006273.1 + 227341 0.69 0.876966
Target:  5'- aGUcGGCCGUggagAGGC-GUCGCCGCGUCUc -3'
miRNA:   3'- -CGuCUGGCG----UUUGaCGGUGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 218393 0.66 0.967136
Target:  5'- aCAGAgCCaGCgAAACUGCCGCgCGUaGUCg -3'
miRNA:   3'- cGUCU-GG-CG-UUUGACGGUG-GCG-CAGa -5'
29945 3' -55.7 NC_006273.1 + 216969 0.72 0.733083
Target:  5'- cGCGGGCCGUcuuGGCcacgGCCGCaGCGUCa -3'
miRNA:   3'- -CGUCUGGCGu--UUGa---CGGUGgCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 215222 0.67 0.946803
Target:  5'- uGCAGugUGUGGugauucggcacguuCUGCguCCGCGUCUc -3'
miRNA:   3'- -CGUCugGCGUUu-------------GACGguGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 213112 0.7 0.831428
Target:  5'- cGCAGAUgagCGCAccGACgGCggaGCCGCGUCg -3'
miRNA:   3'- -CGUCUG---GCGU--UUGaCGg--UGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 213070 0.66 0.957074
Target:  5'- cGCGGcguUCGUuGGCgccGCUGCCGCGUCg -3'
miRNA:   3'- -CGUCu--GGCGuUUGa--CGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 213016 0.69 0.876266
Target:  5'- aGCAGACCGUGAggguacaagccaGCUGCCAcacgagcCCGUGa-- -3'
miRNA:   3'- -CGUCUGGCGUU------------UGACGGU-------GGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 210442 0.66 0.949305
Target:  5'- aGCAG-CCGCAGGg-GCCaaguccaggGCCGCGUg- -3'
miRNA:   3'- -CGUCuGGCGUUUgaCGG---------UGGCGCAga -5'
29945 3' -55.7 NC_006273.1 + 210000 0.71 0.761378
Target:  5'- cCAGACUGCGggUcGCCAgCCGgGUCUc -3'
miRNA:   3'- cGUCUGGCGUuuGaCGGU-GGCgCAGA- -5'
29945 3' -55.7 NC_006273.1 + 204721 0.74 0.594747
Target:  5'- gGCcGGCCGCAGGaaGCCGCCcggcGCGUCg -3'
miRNA:   3'- -CGuCUGGCGUUUgaCGGUGG----CGCAGa -5'
29945 3' -55.7 NC_006273.1 + 203915 0.68 0.92064
Target:  5'- cCAGGCCGaCGAggagGCgcaGCCACCGCcUCa -3'
miRNA:   3'- cGUCUGGC-GUU----UGa--CGGUGGCGcAGa -5'
29945 3' -55.7 NC_006273.1 + 202621 0.67 0.94509
Target:  5'- uGCGcGCCGCcGACUcGCUGCCGCaGUUg -3'
miRNA:   3'- -CGUcUGGCGuUUGA-CGGUGGCG-CAGa -5'
29945 3' -55.7 NC_006273.1 + 202042 0.67 0.940653
Target:  5'- cGCAgGAUCGCAcGCgGCUGCCGCaGUUc -3'
miRNA:   3'- -CGU-CUGGCGUuUGaCGGUGGCG-CAGa -5'
29945 3' -55.7 NC_006273.1 + 201558 0.68 0.92064
Target:  5'- cGCGGGCUGgGccugUGCCAacCCGCGUCg -3'
miRNA:   3'- -CGUCUGGCgUuug-ACGGU--GGCGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.