miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 3' -55.7 NC_006273.1 + 154343 0.71 0.77971
Target:  5'- aGCAGAuCCGCcuGAGCgagcGCCACCGUcUCUu -3'
miRNA:   3'- -CGUCU-GGCG--UUUGa---CGGUGGCGcAGA- -5'
29945 3' -55.7 NC_006273.1 + 100377 0.72 0.704038
Target:  5'- uGCAGAUCGCAGAC-GUCGUCGCGUa- -3'
miRNA:   3'- -CGUCUGGCGUUUGaCGGUGGCGCAga -5'
29945 3' -55.7 NC_006273.1 + 122201 0.72 0.704038
Target:  5'- gGC-GACCGCGcgacuccauGCUGCCugCGCGUa- -3'
miRNA:   3'- -CGuCUGGCGUu--------UGACGGugGCGCAga -5'
29945 3' -55.7 NC_006273.1 + 115908 0.72 0.723473
Target:  5'- gGCAGGCCGguGuggcGCUGCacaaAgCGCGUCa -3'
miRNA:   3'- -CGUCUGGCguU----UGACGg---UgGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 216969 0.72 0.733083
Target:  5'- cGCGGGCCGUcuuGGCcacgGCCGCaGCGUCa -3'
miRNA:   3'- -CGUCUGGCGu--UUGa---CGGUGgCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 233212 0.72 0.742609
Target:  5'- cGCc-GCCGCugcugccGCUGCCGCCGcCGUCg -3'
miRNA:   3'- -CGucUGGCGuu-----UGACGGUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 141008 0.71 0.761378
Target:  5'- -aAGACUGCGccgcGGCUGUUACCGaCGUCa -3'
miRNA:   3'- cgUCUGGCGU----UUGACGGUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 210000 0.71 0.761378
Target:  5'- cCAGACUGCGggUcGCCAgCCGgGUCUc -3'
miRNA:   3'- cGUCUGGCGUuuGaCGGU-GGCgCAGA- -5'
29945 3' -55.7 NC_006273.1 + 116400 0.71 0.770603
Target:  5'- aGCAG-UCGCAGGCUGUggCGCCG-GUCUa -3'
miRNA:   3'- -CGUCuGGCGUUUGACG--GUGGCgCAGA- -5'
29945 3' -55.7 NC_006273.1 + 235103 0.73 0.674473
Target:  5'- cGCGGGCCccgggGCAcACUGCaCAacCCGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUuUGACG-GU--GGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 272 0.73 0.674473
Target:  5'- cGCGGGCCccgggGCAcACUGCaCAacCCGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUuUGACG-GU--GGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 196257 0.74 0.624641
Target:  5'- aCGGACCuGCGucAGCUGUCGCCGCGg-- -3'
miRNA:   3'- cGUCUGG-CGU--UUGACGGUGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 123067 0.77 0.44292
Target:  5'- cGCAG-CCGCAGGCgaaacGCCACUGgGUCg -3'
miRNA:   3'- -CGUCuGGCGUUUGa----CGGUGGCgCAGa -5'
29945 3' -55.7 NC_006273.1 + 162790 0.75 0.555279
Target:  5'- gGCAGcgGCCGCAugucGCUGCCGCUGgacaCGUCUg -3'
miRNA:   3'- -CGUC--UGGCGUu---UGACGGUGGC----GCAGA- -5'
29945 3' -55.7 NC_006273.1 + 141805 0.75 0.584825
Target:  5'- aCAGGCCGCGcaGGCcGCCGCCGC-UCa -3'
miRNA:   3'- cGUCUGGCGU--UUGaCGGUGGCGcAGa -5'
29945 3' -55.7 NC_006273.1 + 34868 0.74 0.593753
Target:  5'- aGCGGAUCGCGAaauaggcGCUcGUCACCGuCGUCa -3'
miRNA:   3'- -CGUCUGGCGUU-------UGA-CGGUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 132360 0.74 0.594747
Target:  5'- ---aGCCGCGGccGCUGCCGCCGCGg-- -3'
miRNA:   3'- cgucUGGCGUU--UGACGGUGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 204721 0.74 0.594747
Target:  5'- gGCcGGCCGCAGGaaGCCGCCcggcGCGUCg -3'
miRNA:   3'- -CGuCUGGCGUUUgaCGGUGG----CGCAGa -5'
29945 3' -55.7 NC_006273.1 + 118743 0.74 0.614662
Target:  5'- aCGGACCGCAAcguGCUGCUaugucuGCCGCGg-- -3'
miRNA:   3'- cGUCUGGCGUU---UGACGG------UGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 113001 0.74 0.624641
Target:  5'- gGCGGugUugaGUGAGCUGCCucagcuguuACCGCGUCUg -3'
miRNA:   3'- -CGUCugG---CGUUUGACGG---------UGGCGCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.