miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 3' -55.7 NC_006273.1 + 42628 1.1 0.00385
Target:  5'- cGCAGACCGCAAACUGCCACCGCGUCUg -3'
miRNA:   3'- -CGUCUGGCGUUUGACGGUGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 72149 0.72 0.713789
Target:  5'- cGCGGACUGCGAggagGCUGaggCGCCGCGg-- -3'
miRNA:   3'- -CGUCUGGCGUU----UGACg--GUGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 38319 0.72 0.742609
Target:  5'- cGCc-GCCGCugcugccGCUGCCGCCGcCGUCg -3'
miRNA:   3'- -CGucUGGCGuu-----UGACGGUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 233859 0.66 0.967136
Target:  5'- gGCGGGCCugugcGCAAGCagcguaGuCCGCgGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUUUGa-----C-GGUGgCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 122832 0.76 0.516613
Target:  5'- gGCGG-CCGCuGACgcgGCgACCGCGUCa -3'
miRNA:   3'- -CGUCuGGCGuUUGa--CGgUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 182609 0.75 0.535825
Target:  5'- aGCGGuCCGUGGACUugGUgGCCGCGUCUu -3'
miRNA:   3'- -CGUCuGGCGUUUGA--CGgUGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 90606 0.74 0.594747
Target:  5'- --uGACUGCAAcagcgaggccACgGCCGCCGCGUCg -3'
miRNA:   3'- cguCUGGCGUU----------UGaCGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 1364 0.74 0.624641
Target:  5'- aCGGACCuGCGucAGCUGUCGCCGCGg-- -3'
miRNA:   3'- cGUCUGG-CGU--UUGACGGUGGCGCaga -5'
29945 3' -55.7 NC_006273.1 + 40210 0.73 0.674473
Target:  5'- cGCGGGCCccgggGCAcACUGCaCAacCCGCGUCg -3'
miRNA:   3'- -CGUCUGG-----CGUuUGACG-GU--GGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 68065 0.72 0.713789
Target:  5'- cGCcguGGCCGCc-GCUGCCGCCGCuGUg- -3'
miRNA:   3'- -CGu--CUGGCGuuUGACGGUGGCG-CAga -5'
29945 3' -55.7 NC_006273.1 + 102584 0.73 0.694229
Target:  5'- -gGGGCCGguG-CUGCCGCCGuCGUUg -3'
miRNA:   3'- cgUCUGGCguUuGACGGUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 99358 0.73 0.654584
Target:  5'- cGCGGcCCGCGGAUcgGCCAgCGCuGUCUa -3'
miRNA:   3'- -CGUCuGGCGUUUGa-CGGUgGCG-CAGA- -5'
29945 3' -55.7 NC_006273.1 + 86723 0.81 0.287541
Target:  5'- gGCAGGCCGCAccacgagAGCaccucaGCCGCCGCGUCc -3'
miRNA:   3'- -CGUCUGGCGU-------UUGa-----CGGUGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 166408 0.72 0.704038
Target:  5'- cGCAGAUCGCGgaucuuuuccAACUGCgACCGaaaGUCc -3'
miRNA:   3'- -CGUCUGGCGU----------UUGACGgUGGCg--CAGa -5'
29945 3' -55.7 NC_006273.1 + 97232 0.77 0.44292
Target:  5'- cGCAGGCCGUGGccGCcGCCaugaGCCGCGUCa -3'
miRNA:   3'- -CGUCUGGCGUU--UGaCGG----UGGCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 63791 0.74 0.634627
Target:  5'- -gAGAcCCGCGG--UGCUACCGCGUCUu -3'
miRNA:   3'- cgUCU-GGCGUUugACGGUGGCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 42246 0.72 0.713789
Target:  5'- aGCAGGCCGCAcACgUGUcgacgaCACCGcCGUCg -3'
miRNA:   3'- -CGUCUGGCGUuUG-ACG------GUGGC-GCAGa -5'
29945 3' -55.7 NC_006273.1 + 198111 0.72 0.733083
Target:  5'- -aGGGCUGCucGGCgGCCACgGCGUCUu -3'
miRNA:   3'- cgUCUGGCGu-UUGaCGGUGgCGCAGA- -5'
29945 3' -55.7 NC_006273.1 + 91278 0.76 0.488337
Target:  5'- cGCAGACCcucgucGCGAGCcagcgcgGCCACgCGCGUCa -3'
miRNA:   3'- -CGUCUGG------CGUUUGa------CGGUG-GCGCAGa -5'
29945 3' -55.7 NC_006273.1 + 118411 0.75 0.584825
Target:  5'- aGCAGugcuGCCGCAGcGCUGCCACUGUG-Ca -3'
miRNA:   3'- -CGUC----UGGCGUU-UGACGGUGGCGCaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.