miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 5' -56.5 NC_006273.1 + 18905 0.66 0.935979
Target:  5'- uCACACGCuc--GCAGCUAGAG-AGCg -3'
miRNA:   3'- uGUGUGCGucguCGUCGGUCUCcUUG- -5'
29945 5' -56.5 NC_006273.1 + 84853 0.66 0.935979
Target:  5'- -gGC-CGCGGCGGCcGUCAGGGuGGAg -3'
miRNA:   3'- ugUGuGCGUCGUCGuCGGUCUC-CUUg -5'
29945 5' -56.5 NC_006273.1 + 73187 0.66 0.935979
Target:  5'- gUAgACGCGGCGccGCAaccaccgccuccGCCGGAGGAu- -3'
miRNA:   3'- uGUgUGCGUCGU--CGU------------CGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 171564 0.66 0.935979
Target:  5'- uCACuCGCGGCGugccGCuGCCGGuGGAAg -3'
miRNA:   3'- uGUGuGCGUCGU----CGuCGGUCuCCUUg -5'
29945 5' -56.5 NC_006273.1 + 41360 0.66 0.935979
Target:  5'- cCACGCGCGuucGC-GCGGCCAGuuggcGGggUu -3'
miRNA:   3'- uGUGUGCGU---CGuCGUCGGUCu----CCuuG- -5'
29945 5' -56.5 NC_006273.1 + 112197 0.66 0.935979
Target:  5'- aGCGCGUGCuucGGCGGUuGCUGGAGGAcGCg -3'
miRNA:   3'- -UGUGUGCG---UCGUCGuCGGUCUCCU-UG- -5'
29945 5' -56.5 NC_006273.1 + 209644 0.66 0.935494
Target:  5'- uACGC-CGguGCAGCugagaaaGGCCAGuaaGGuGAACa -3'
miRNA:   3'- -UGUGuGCguCGUCG-------UCGGUC---UC-CUUG- -5'
29945 5' -56.5 NC_006273.1 + 99831 0.66 0.931024
Target:  5'- ---uGCGaCGGUGGCugGGCgGGAGGAGCg -3'
miRNA:   3'- ugugUGC-GUCGUCG--UCGgUCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 85639 0.66 0.931024
Target:  5'- uCACGCGCucccguaacAGCgccGGCAGCCGGcccAGGAc- -3'
miRNA:   3'- uGUGUGCG---------UCG---UCGUCGGUC---UCCUug -5'
29945 5' -56.5 NC_006273.1 + 63941 0.66 0.931024
Target:  5'- cGCGUACGuCAGauCAGCAGCgacaCAGAGGAAg -3'
miRNA:   3'- -UGUGUGC-GUC--GUCGUCG----GUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 14012 0.66 0.931024
Target:  5'- -gGCGCGgGGUGGCGGagcGGGGAGCg -3'
miRNA:   3'- ugUGUGCgUCGUCGUCgguCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 78667 0.66 0.930516
Target:  5'- cGCGCACGCgagaaggGGCcgggguccgcgGGCAccgccGCCGGAGGcGCg -3'
miRNA:   3'- -UGUGUGCG-------UCG-----------UCGU-----CGGUCUCCuUG- -5'
29945 5' -56.5 NC_006273.1 + 66681 0.66 0.925836
Target:  5'- gACACGCGUAcCAGCaAGCCAcgcagcaaaacGAGGGu- -3'
miRNA:   3'- -UGUGUGCGUcGUCG-UCGGU-----------CUCCUug -5'
29945 5' -56.5 NC_006273.1 + 192366 0.66 0.925836
Target:  5'- cGCACACcCcccGCGGCAcCCAGAGGGc- -3'
miRNA:   3'- -UGUGUGcGu--CGUCGUcGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 167325 0.66 0.925836
Target:  5'- -gGCG-GCAGCGGCGGCCAcGGcGGcGCu -3'
miRNA:   3'- ugUGUgCGUCGUCGUCGGU-CU-CCuUG- -5'
29945 5' -56.5 NC_006273.1 + 194876 0.66 0.924234
Target:  5'- -aGCGCGCcgggucgccuguccGGCAGCAGCCGGGc---- -3'
miRNA:   3'- ugUGUGCG--------------UCGUCGUCGGUCUccuug -5'
29945 5' -56.5 NC_006273.1 + 144420 0.66 0.920414
Target:  5'- gGCGC-CGCGGCGGCGGaCGGuucGGGuGGCg -3'
miRNA:   3'- -UGUGuGCGUCGUCGUCgGUC---UCC-UUG- -5'
29945 5' -56.5 NC_006273.1 + 174123 0.66 0.920414
Target:  5'- cGCGCGCGCcgcgcuGCAGUGGCUGGAccuGGGcccGCa -3'
miRNA:   3'- -UGUGUGCGu-----CGUCGUCGGUCU---CCU---UG- -5'
29945 5' -56.5 NC_006273.1 + 36397 0.66 0.920414
Target:  5'- aGCACugGCAGgGGUGGCaaaacgCAGuuGAGCg -3'
miRNA:   3'- -UGUGugCGUCgUCGUCG------GUCucCUUG- -5'
29945 5' -56.5 NC_006273.1 + 153931 0.66 0.920414
Target:  5'- cGCGCuauCGuCAGCAucuGguGCCuucGGGGAACg -3'
miRNA:   3'- -UGUGu--GC-GUCGU---CguCGGu--CUCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.