miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 5' -56.5 NC_006273.1 + 142053 0.66 0.908873
Target:  5'- cCACGucgucuCGCGGCAGCGccGCCAGcGGcGACg -3'
miRNA:   3'- uGUGU------GCGUCGUCGU--CGGUCuCC-UUG- -5'
29945 5' -56.5 NC_006273.1 + 73100 0.66 0.920414
Target:  5'- gAUGCAC-CAGCuGCuGCUGGAGGAc- -3'
miRNA:   3'- -UGUGUGcGUCGuCGuCGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 195820 0.66 0.908873
Target:  5'- uCGguCGCGGCcGCggGGCCGGAGGGc- -3'
miRNA:   3'- uGUguGCGUCGuCG--UCGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 66681 0.66 0.925836
Target:  5'- gACACGCGUAcCAGCaAGCCAcgcagcaaaacGAGGGu- -3'
miRNA:   3'- -UGUGUGCGUcGUCG-UCGGU-----------CUCCUug -5'
29945 5' -56.5 NC_006273.1 + 153791 0.66 0.914759
Target:  5'- cCGC-CGCGGCcGCGGCCGccgccugcGAGGAc- -3'
miRNA:   3'- uGUGuGCGUCGuCGUCGGU--------CUCCUug -5'
29945 5' -56.5 NC_006273.1 + 144420 0.66 0.920414
Target:  5'- gGCGC-CGCGGCGGCGGaCGGuucGGGuGGCg -3'
miRNA:   3'- -UGUGuGCGUCGUCGUCgGUC---UCC-UUG- -5'
29945 5' -56.5 NC_006273.1 + 38199 0.66 0.911255
Target:  5'- cGCGC-CGCGGCcgcucauccggagacGGCGgaaaccgcggcGCCGGAGGAAa -3'
miRNA:   3'- -UGUGuGCGUCG---------------UCGU-----------CGGUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 167325 0.66 0.925836
Target:  5'- -gGCG-GCAGCGGCGGCCAcGGcGGcGCu -3'
miRNA:   3'- ugUGUgCGUCGUCGUCGGU-CU-CCuUG- -5'
29945 5' -56.5 NC_006273.1 + 131056 0.66 0.908271
Target:  5'- uUACgGgGCAGCAGCugcGCCGGgccuaucAGGAACa -3'
miRNA:   3'- uGUG-UgCGUCGUCGu--CGGUC-------UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 126760 0.66 0.914759
Target:  5'- cCugACGCuGCGcGUGGuCCAGAGGcGCg -3'
miRNA:   3'- uGugUGCGuCGU-CGUC-GGUCUCCuUG- -5'
29945 5' -56.5 NC_006273.1 + 73187 0.66 0.935979
Target:  5'- gUAgACGCGGCGccGCAaccaccgccuccGCCGGAGGAu- -3'
miRNA:   3'- uGUgUGCGUCGU--CGU------------CGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 33498 0.66 0.920414
Target:  5'- aGCgACACGCuGCGGUAGUC--GGGAAUc -3'
miRNA:   3'- -UG-UGUGCGuCGUCGUCGGucUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 185111 0.66 0.914759
Target:  5'- -gGCgAUGuCAGCGGUGGCgaAGGGGAACg -3'
miRNA:   3'- ugUG-UGC-GUCGUCGUCGg-UCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 162713 0.66 0.914759
Target:  5'- aGCACGaaggccaugGCGGCGGCGGCaagaacgAGAcGGAGCa -3'
miRNA:   3'- -UGUGUg--------CGUCGUCGUCGg------UCU-CCUUG- -5'
29945 5' -56.5 NC_006273.1 + 192366 0.66 0.925836
Target:  5'- cGCACACcCcccGCGGCAcCCAGAGGGc- -3'
miRNA:   3'- -UGUGUGcGu--CGUCGUcGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 99831 0.66 0.931024
Target:  5'- ---uGCGaCGGUGGCugGGCgGGAGGAGCg -3'
miRNA:   3'- ugugUGC-GUCGUCG--UCGgUCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 84853 0.66 0.935979
Target:  5'- -gGC-CGCGGCGGCcGUCAGGGuGGAg -3'
miRNA:   3'- ugUGuGCGUCGUCGuCGGUCUC-CUUg -5'
29945 5' -56.5 NC_006273.1 + 28824 0.66 0.914759
Target:  5'- aACGCA-GCGGCucggGGCAGC-AGAGGuAGCu -3'
miRNA:   3'- -UGUGUgCGUCG----UCGUCGgUCUCC-UUG- -5'
29945 5' -56.5 NC_006273.1 + 63941 0.66 0.931024
Target:  5'- cGCGUACGuCAGauCAGCAGCgacaCAGAGGAAg -3'
miRNA:   3'- -UGUGUGC-GUC--GUCGUCG----GUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 140069 0.66 0.919859
Target:  5'- -aGCA-GUAGCAGUgguggcgauagcgGGCCGGAGGAc- -3'
miRNA:   3'- ugUGUgCGUCGUCG-------------UCGGUCUCCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.