miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 5' -56.5 NC_006273.1 + 195820 0.66 0.908873
Target:  5'- uCGguCGCGGCcGCggGGCCGGAGGGc- -3'
miRNA:   3'- uGUguGCGUCGuCG--UCGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 142053 0.66 0.908873
Target:  5'- cCACGucgucuCGCGGCAGCGccGCCAGcGGcGACg -3'
miRNA:   3'- uGUGU------GCGUCGUCGU--CGGUCuCC-UUG- -5'
29945 5' -56.5 NC_006273.1 + 14012 0.66 0.931024
Target:  5'- -gGCGCGgGGUGGCGGagcGGGGAGCg -3'
miRNA:   3'- ugUGUGCgUCGUCGUCgguCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 174123 0.66 0.920414
Target:  5'- cGCGCGCGCcgcgcuGCAGUGGCUGGAccuGGGcccGCa -3'
miRNA:   3'- -UGUGUGCGu-----CGUCGUCGGUCU---CCU---UG- -5'
29945 5' -56.5 NC_006273.1 + 161796 0.66 0.920414
Target:  5'- -gGCA-GCGGCAGCGGCgGGccAGGAc- -3'
miRNA:   3'- ugUGUgCGUCGUCGUCGgUC--UCCUug -5'
29945 5' -56.5 NC_006273.1 + 73187 0.66 0.935979
Target:  5'- gUAgACGCGGCGccGCAaccaccgccuccGCCGGAGGAu- -3'
miRNA:   3'- uGUgUGCGUCGU--CGU------------CGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 36397 0.66 0.920414
Target:  5'- aGCACugGCAGgGGUGGCaaaacgCAGuuGAGCg -3'
miRNA:   3'- -UGUGugCGUCgUCGUCG------GUCucCUUG- -5'
29945 5' -56.5 NC_006273.1 + 85639 0.66 0.931024
Target:  5'- uCACGCGCucccguaacAGCgccGGCAGCCGGcccAGGAc- -3'
miRNA:   3'- uGUGUGCG---------UCG---UCGUCGGUC---UCCUug -5'
29945 5' -56.5 NC_006273.1 + 78667 0.66 0.930516
Target:  5'- cGCGCACGCgagaaggGGCcgggguccgcgGGCAccgccGCCGGAGGcGCg -3'
miRNA:   3'- -UGUGUGCG-------UCG-----------UCGU-----CGGUCUCCuUG- -5'
29945 5' -56.5 NC_006273.1 + 928 0.66 0.908873
Target:  5'- uCGguCGCGGCcGCggGGCCGGAGGGc- -3'
miRNA:   3'- uGUguGCGUCGuCG--UCGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 99831 0.66 0.931024
Target:  5'- ---uGCGaCGGUGGCugGGCgGGAGGAGCg -3'
miRNA:   3'- ugugUGC-GUCGUCG--UCGgUCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 131056 0.66 0.908271
Target:  5'- uUACgGgGCAGCAGCugcGCCGGgccuaucAGGAACa -3'
miRNA:   3'- uGUG-UgCGUCGUCGu--CGGUC-------UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 203138 0.66 0.908873
Target:  5'- uAguCGCGCGGUGGCAGCgGGGGuGGu- -3'
miRNA:   3'- -UguGUGCGUCGUCGUCGgUCUC-CUug -5'
29945 5' -56.5 NC_006273.1 + 81593 0.66 0.920414
Target:  5'- uCGCAgGCGGCGGCcgcGGCCgcggcGGAGGccgaAGCg -3'
miRNA:   3'- uGUGUgCGUCGUCG---UCGG-----UCUCC----UUG- -5'
29945 5' -56.5 NC_006273.1 + 194876 0.66 0.924234
Target:  5'- -aGCGCGCcgggucgccuguccGGCAGCAGCCGGGc---- -3'
miRNA:   3'- ugUGUGCG--------------UCGUCGUCGGUCUccuug -5'
29945 5' -56.5 NC_006273.1 + 18905 0.66 0.935979
Target:  5'- uCACACGCuc--GCAGCUAGAG-AGCg -3'
miRNA:   3'- uGUGUGCGucguCGUCGGUCUCcUUG- -5'
29945 5' -56.5 NC_006273.1 + 153931 0.66 0.920414
Target:  5'- cGCGCuauCGuCAGCAucuGguGCCuucGGGGAACg -3'
miRNA:   3'- -UGUGu--GC-GUCGU---CguCGGu--CUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 158707 0.67 0.880969
Target:  5'- gGCACACGCGGguCGGCGGCgAuGAuguuccccgcgaagGGGACa -3'
miRNA:   3'- -UGUGUGCGUC--GUCGUCGgU-CU--------------CCUUG- -5'
29945 5' -56.5 NC_006273.1 + 7712 0.67 0.896411
Target:  5'- -gGC-CGCGGCAGCGG--GGAGGAGa -3'
miRNA:   3'- ugUGuGCGUCGUCGUCggUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 160800 0.67 0.88984
Target:  5'- -gACGCGCAGUugGGCGGC-GGAuuGGGGCg -3'
miRNA:   3'- ugUGUGCGUCG--UCGUCGgUCU--CCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.