miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 5' -56.5 NC_006273.1 + 42662 1.08 0.003735
Target:  5'- cACACACGCAGCAGCAGCCAGAGGAACc -3'
miRNA:   3'- -UGUGUGCGUCGUCGUCGGUCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 200465 0.79 0.275203
Target:  5'- cCAC-CGCuaaccCAGCAGCCGGAGGAGCa -3'
miRNA:   3'- uGUGuGCGuc---GUCGUCGGUCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 48651 0.79 0.288272
Target:  5'- gGCGCACGCAGCGgucGCAGgacgggauaucCCAGAGGAAg -3'
miRNA:   3'- -UGUGUGCGUCGU---CGUC-----------GGUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 162206 0.79 0.301824
Target:  5'- gGC-CGCGguGCGcuGCAGCCGGAGGAAg -3'
miRNA:   3'- -UGuGUGCguCGU--CGUCGGUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 186065 0.78 0.330386
Target:  5'- cGCGCGgGCGGCAGCAuCCAGAccauGGAGCu -3'
miRNA:   3'- -UGUGUgCGUCGUCGUcGGUCU----CCUUG- -5'
29945 5' -56.5 NC_006273.1 + 105418 0.77 0.385026
Target:  5'- aGCcCGUGCAGCAGCAGCCccAGGGACg -3'
miRNA:   3'- -UGuGUGCGUCGUCGUCGGucUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 16883 0.76 0.401698
Target:  5'- aACACGgucUGCGGCGcGCGGCCAGGcuGGAACg -3'
miRNA:   3'- -UGUGU---GCGUCGU-CGUCGGUCU--CCUUG- -5'
29945 5' -56.5 NC_006273.1 + 35891 0.76 0.410205
Target:  5'- uGC-CGUGCAGCGGCGGCCAGcacagcGGGAGCc -3'
miRNA:   3'- -UGuGUGCGUCGUCGUCGGUC------UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 188618 0.76 0.418822
Target:  5'- uGCGCGCGCGGCAG-AGUCGGAuGAGCc -3'
miRNA:   3'- -UGUGUGCGUCGUCgUCGGUCUcCUUG- -5'
29945 5' -56.5 NC_006273.1 + 104882 0.75 0.44532
Target:  5'- uCACACGCGGcCGGCGGCC-GAGGuggaguGCa -3'
miRNA:   3'- uGUGUGCGUC-GUCGUCGGuCUCCu-----UG- -5'
29945 5' -56.5 NC_006273.1 + 229187 0.75 0.454359
Target:  5'- -aGCAC-UAGCAGCGGCCAGAGuAGCg -3'
miRNA:   3'- ugUGUGcGUCGUCGUCGGUCUCcUUG- -5'
29945 5' -56.5 NC_006273.1 + 139588 0.75 0.482053
Target:  5'- --uUAgGCGGCAGCGGCgAGAGGAGa -3'
miRNA:   3'- uguGUgCGUCGUCGUCGgUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 80399 0.75 0.482053
Target:  5'- -gGCG-GCGGCAGCGGCgCAGAGcGAACu -3'
miRNA:   3'- ugUGUgCGUCGUCGUCG-GUCUC-CUUG- -5'
29945 5' -56.5 NC_006273.1 + 68054 0.75 0.491466
Target:  5'- -uGCACGCuaccGCAGCAGUCaacagaagauGGAGGGACa -3'
miRNA:   3'- ugUGUGCGu---CGUCGUCGG----------UCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 34627 0.74 0.50001
Target:  5'- cCACACGCuacuucucagcgaAGCAcugcuGCAGCCAGAccGGAGCg -3'
miRNA:   3'- uGUGUGCG-------------UCGU-----CGUCGGUCU--CCUUG- -5'
29945 5' -56.5 NC_006273.1 + 190205 0.74 0.510539
Target:  5'- aACACGCugaaCAGCAGCGGCUAcAGGGGCc -3'
miRNA:   3'- -UGUGUGc---GUCGUCGUCGGUcUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 102288 0.74 0.539704
Target:  5'- -gACGCGUGGCGGCGGUgaCAGGGGcAACg -3'
miRNA:   3'- ugUGUGCGUCGUCGUCG--GUCUCC-UUG- -5'
29945 5' -56.5 NC_006273.1 + 112596 0.74 0.539704
Target:  5'- gGCugGCGCAGUgcgccgAGCAGCCGuugcccGGGAACg -3'
miRNA:   3'- -UGugUGCGUCG------UCGUCGGUc-----UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 58138 0.74 0.539704
Target:  5'- gGCACGCGCAGCGGCcuCCGcaccacgguGGGGAAg -3'
miRNA:   3'- -UGUGUGCGUCGUCGucGGU---------CUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 197033 0.74 0.539704
Target:  5'- -gACGCGCAcGCGGUGGUCGGGGcGGACg -3'
miRNA:   3'- ugUGUGCGU-CGUCGUCGGUCUC-CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.