Results 21 - 40 of 145 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 197033 | 0.74 | 0.539704 |
Target: 5'- -gACGCGCAcGCGGUGGUCGGGGcGGACg -3' miRNA: 3'- ugUGUGCGU-CGUCGUCGGUCUC-CUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 44434 | 0.73 | 0.559457 |
Target: 5'- aGCGCAUGCGGCAguguuuccGCGGCCAGuugcuGGAc- -3' miRNA: 3'- -UGUGUGCGUCGU--------CGUCGGUCu----CCUug -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 63989 | 0.73 | 0.589441 |
Target: 5'- ---aAUGCAGCAGUGG-CGGAGGAGCa -3' miRNA: 3'- ugugUGCGUCGUCGUCgGUCUCCUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 82053 | 0.72 | 0.619695 |
Target: 5'- -aGCG-GCAGCGGCGGCagaAGAGGAGa -3' miRNA: 3'- ugUGUgCGUCGUCGUCGg--UCUCCUUg -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 169477 | 0.72 | 0.62374 |
Target: 5'- uGCAUGCGCuGCAgauccaggccgugguGCAGCCAGuuGAGCa -3' miRNA: 3'- -UGUGUGCGuCGU---------------CGUCGGUCucCUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 117205 | 0.72 | 0.650032 |
Target: 5'- uACACACgGUAGUAGUAGUUggGGAGGAAg -3' miRNA: 3'- -UGUGUG-CGUCGUCGUCGG--UCUCCUUg -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 201036 | 0.71 | 0.670199 |
Target: 5'- -gACGCGCAcccauuacuuGCGGCAGCUAugcucgaugaccGAGGAGCu -3' miRNA: 3'- ugUGUGCGU----------CGUCGUCGGU------------CUCCUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 111962 | 0.71 | 0.670199 |
Target: 5'- uGC-CGCGCGGUGGCGGUCaAGucuGGAGCg -3' miRNA: 3'- -UGuGUGCGUCGUCGUCGG-UCu--CCUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 163137 | 0.71 | 0.670199 |
Target: 5'- gGCugAgGCGGCGgaggcaccaccGCAGUCGGAGGAGg -3' miRNA: 3'- -UGugUgCGUCGU-----------CGUCGGUCUCCUUg -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 192093 | 0.71 | 0.680242 |
Target: 5'- --uUACGCAGCAGCAGgCAcgcaacGGGAGCg -3' miRNA: 3'- uguGUGCGUCGUCGUCgGUc-----UCCUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 194903 | 0.71 | 0.700202 |
Target: 5'- cCGCAC-CGGCGGCGGUCGGggugugucGGGGGCg -3' miRNA: 3'- uGUGUGcGUCGUCGUCGGUC--------UCCUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 10 | 0.71 | 0.700202 |
Target: 5'- cCGCAC-CGGCGGCGGUCGGggugugucGGGGGCg -3' miRNA: 3'- uGUGUGcGUCGUCGUCGGUC--------UCCUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 213546 | 0.71 | 0.700202 |
Target: 5'- uCGCACGagGGCAGCAGaCCcGAGGuGCg -3' miRNA: 3'- uGUGUGCg-UCGUCGUC-GGuCUCCuUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 234841 | 0.71 | 0.700202 |
Target: 5'- cCGCAC-CGGCGGCGGUCGGggugugucGGGGGCg -3' miRNA: 3'- uGUGUGcGUCGUCGUCGGUC--------UCCUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 150488 | 0.71 | 0.710103 |
Target: 5'- ---aGCGCGGUGGCAGCUuGGGGggUg -3' miRNA: 3'- ugugUGCGUCGUCGUCGGuCUCCuuG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 1318 | 0.7 | 0.719939 |
Target: 5'- cUACGCGCGGguGacgccgcgCAGCCAGAuGAACg -3' miRNA: 3'- uGUGUGCGUCguC--------GUCGGUCUcCUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 196211 | 0.7 | 0.719939 |
Target: 5'- cUACGCGCGGguGacgccgcgCAGCCAGAuGAACg -3' miRNA: 3'- uGUGUGCGUCguC--------GUCGGUCUcCUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 41504 | 0.7 | 0.729702 |
Target: 5'- gACAgGCGUcggcgugaggauGGCAGCGccggcGCCAGcAGGAACg -3' miRNA: 3'- -UGUgUGCG------------UCGUCGU-----CGGUC-UCCUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 148012 | 0.7 | 0.739382 |
Target: 5'- uGCGC-CGCaAGCGGCGGCaaCAGcuucGGGAGCa -3' miRNA: 3'- -UGUGuGCG-UCGUCGUCG--GUC----UCCUUG- -5' |
|||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 45886 | 0.7 | 0.739382 |
Target: 5'- cACACAgCGCGGCGGCcgGGCCGccGAGGccGAUg -3' miRNA: 3'- -UGUGU-GCGUCGUCG--UCGGU--CUCC--UUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home