miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 5' -56.5 NC_006273.1 + 153931 0.66 0.920414
Target:  5'- cGCGCuauCGuCAGCAucuGguGCCuucGGGGAACg -3'
miRNA:   3'- -UGUGu--GC-GUCGU---CguCGGu--CUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 174123 0.66 0.920414
Target:  5'- cGCGCGCGCcgcgcuGCAGUGGCUGGAccuGGGcccGCa -3'
miRNA:   3'- -UGUGUGCGu-----CGUCGUCGGUCU---CCU---UG- -5'
29945 5' -56.5 NC_006273.1 + 36397 0.66 0.920414
Target:  5'- aGCACugGCAGgGGUGGCaaaacgCAGuuGAGCg -3'
miRNA:   3'- -UGUGugCGUCgUCGUCG------GUCucCUUG- -5'
29945 5' -56.5 NC_006273.1 + 161796 0.66 0.920414
Target:  5'- -gGCA-GCGGCAGCGGCgGGccAGGAc- -3'
miRNA:   3'- ugUGUgCGUCGUCGUCGgUC--UCCUug -5'
29945 5' -56.5 NC_006273.1 + 140069 0.66 0.919859
Target:  5'- -aGCA-GUAGCAGUgguggcgauagcgGGCCGGAGGAc- -3'
miRNA:   3'- ugUGUgCGUCGUCG-------------UCGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 126760 0.66 0.914759
Target:  5'- cCugACGCuGCGcGUGGuCCAGAGGcGCg -3'
miRNA:   3'- uGugUGCGuCGU-CGUC-GGUCUCCuUG- -5'
29945 5' -56.5 NC_006273.1 + 28824 0.66 0.914759
Target:  5'- aACGCA-GCGGCucggGGCAGC-AGAGGuAGCu -3'
miRNA:   3'- -UGUGUgCGUCG----UCGUCGgUCUCC-UUG- -5'
29945 5' -56.5 NC_006273.1 + 153791 0.66 0.914759
Target:  5'- cCGC-CGCGGCcGCGGCCGccgccugcGAGGAc- -3'
miRNA:   3'- uGUGuGCGUCGuCGUCGGU--------CUCCUug -5'
29945 5' -56.5 NC_006273.1 + 185111 0.66 0.914759
Target:  5'- -gGCgAUGuCAGCGGUGGCgaAGGGGAACg -3'
miRNA:   3'- ugUG-UGC-GUCGUCGUCGg-UCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 162713 0.66 0.914759
Target:  5'- aGCACGaaggccaugGCGGCGGCGGCaagaacgAGAcGGAGCa -3'
miRNA:   3'- -UGUGUg--------CGUCGUCGUCGg------UCU-CCUUG- -5'
29945 5' -56.5 NC_006273.1 + 38199 0.66 0.911255
Target:  5'- cGCGC-CGCGGCcgcucauccggagacGGCGgaaaccgcggcGCCGGAGGAAa -3'
miRNA:   3'- -UGUGuGCGUCG---------------UCGU-----------CGGUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 144687 0.66 0.908873
Target:  5'- -uGCACGaCAGuCAGCAGUCGGu-GAGCu -3'
miRNA:   3'- ugUGUGC-GUC-GUCGUCGGUCucCUUG- -5'
29945 5' -56.5 NC_006273.1 + 203138 0.66 0.908873
Target:  5'- uAguCGCGCGGUGGCAGCgGGGGuGGu- -3'
miRNA:   3'- -UguGUGCGUCGUCGUCGgUCUC-CUug -5'
29945 5' -56.5 NC_006273.1 + 928 0.66 0.908873
Target:  5'- uCGguCGCGGCcGCggGGCCGGAGGGc- -3'
miRNA:   3'- uGUguGCGUCGuCG--UCGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 195820 0.66 0.908873
Target:  5'- uCGguCGCGGCcGCggGGCCGGAGGGc- -3'
miRNA:   3'- uGUguGCGUCGuCG--UCGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 142053 0.66 0.908873
Target:  5'- cCACGucgucuCGCGGCAGCGccGCCAGcGGcGACg -3'
miRNA:   3'- uGUGU------GCGUCGUCGU--CGGUCuCC-UUG- -5'
29945 5' -56.5 NC_006273.1 + 131056 0.66 0.908271
Target:  5'- uUACgGgGCAGCAGCugcGCCGGgccuaucAGGAACa -3'
miRNA:   3'- uGUG-UgCGUCGUCGu--CGGUC-------UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 82481 0.67 0.902756
Target:  5'- cCAuCACGguGCGGCgcguGGCC-GAGGAGu -3'
miRNA:   3'- uGU-GUGCguCGUCG----UCGGuCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 189928 0.67 0.900876
Target:  5'- cGCACACGCGcgacacagccgucuGCAGCucgucGGCCGGcGuGGGCg -3'
miRNA:   3'- -UGUGUGCGU--------------CGUCG-----UCGGUCuC-CUUG- -5'
29945 5' -56.5 NC_006273.1 + 189412 0.67 0.898976
Target:  5'- aGCACGCGCAgGCaccacgcuuaucagaAGCAGCacccGGGAGCc -3'
miRNA:   3'- -UGUGUGCGU-CG---------------UCGUCGguc-UCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.