miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 5' -56.5 NC_006273.1 + 163840 0.67 0.896411
Target:  5'- cGCAaguCGcCGGCAGCGGCCGccggcGAGGGc- -3'
miRNA:   3'- -UGUgu-GC-GUCGUCGUCGGU-----CUCCUug -5'
29945 5' -56.5 NC_006273.1 + 131907 0.67 0.896411
Target:  5'- gGCACcuccACGCAGCuGGCGcGCCAGcucGAACg -3'
miRNA:   3'- -UGUG----UGCGUCG-UCGU-CGGUCuc-CUUG- -5'
29945 5' -56.5 NC_006273.1 + 132368 0.67 0.896411
Target:  5'- cCGCugcCGCcGCGGCGuuucGuCCGGAGGAGCg -3'
miRNA:   3'- uGUGu--GCGuCGUCGU----C-GGUCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 7712 0.67 0.896411
Target:  5'- -gGC-CGCGGCAGCGG--GGAGGAGa -3'
miRNA:   3'- ugUGuGCGUCGUCGUCggUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 8172 0.67 0.896411
Target:  5'- gGCAuCACGUA-CGGCAGCU-GAGGAGa -3'
miRNA:   3'- -UGU-GUGCGUcGUCGUCGGuCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 160800 0.67 0.88984
Target:  5'- -gACGCGCAGUugGGCGGC-GGAuuGGGGCg -3'
miRNA:   3'- ugUGUGCGUCG--UCGUCGgUCU--CCUUG- -5'
29945 5' -56.5 NC_006273.1 + 101985 0.67 0.88984
Target:  5'- gGC-CACGCAGCAgGC-GCCguggggcugaaAGAGGAGg -3'
miRNA:   3'- -UGuGUGCGUCGU-CGuCGG-----------UCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 168951 0.67 0.88984
Target:  5'- cACGCGCGuCAGCAGCugcguGCuCAGAcGGucCa -3'
miRNA:   3'- -UGUGUGC-GUCGUCGu----CG-GUCU-CCuuG- -5'
29945 5' -56.5 NC_006273.1 + 149534 0.67 0.88984
Target:  5'- -aGCAacaGCAGUAcucaCAGUCAGAGGAAUa -3'
miRNA:   3'- ugUGUg--CGUCGUc---GUCGGUCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 209421 0.67 0.887826
Target:  5'- aGCGCGCGUuccAGCGGCgucucguagcguacAGCCAGGGccGCu -3'
miRNA:   3'- -UGUGUGCG---UCGUCG--------------UCGGUCUCcuUG- -5'
29945 5' -56.5 NC_006273.1 + 36730 0.67 0.885792
Target:  5'- gGCGCGCG-AGCGGCGGCaCAGcucggcccgauggucGGGAuGCa -3'
miRNA:   3'- -UGUGUGCgUCGUCGUCG-GUC---------------UCCU-UG- -5'
29945 5' -56.5 NC_006273.1 + 230671 0.67 0.883049
Target:  5'- -aGCAgGCGGaccgAGCCAGAGGGACc -3'
miRNA:   3'- ugUGUgCGUCgucgUCGGUCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 217289 0.67 0.883049
Target:  5'- uCAU-CGCAGCagagauagucGGCGGCCAGAG-AACg -3'
miRNA:   3'- uGUGuGCGUCG----------UCGUCGGUCUCcUUG- -5'
29945 5' -56.5 NC_006273.1 + 119941 0.67 0.883049
Target:  5'- gGCACGCGgucCAGCGGCAGCgCAaAGGc-- -3'
miRNA:   3'- -UGUGUGC---GUCGUCGUCG-GUcUCCuug -5'
29945 5' -56.5 NC_006273.1 + 44519 0.67 0.883049
Target:  5'- cGCGCACGuCGGCGGCgauAGCCAuGAGu--- -3'
miRNA:   3'- -UGUGUGC-GUCGUCG---UCGGU-CUCcuug -5'
29945 5' -56.5 NC_006273.1 + 40605 0.67 0.882358
Target:  5'- aACACcgACGCGGCuGCcccGGCCuuucaccggagacGGGGGGGCa -3'
miRNA:   3'- -UGUG--UGCGUCGuCG---UCGG-------------UCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 158707 0.67 0.880969
Target:  5'- gGCACACGCGGguCGGCGGCgAuGAuguuccccgcgaagGGGACa -3'
miRNA:   3'- -UGUGUGCGUC--GUCGUCGgU-CU--------------CCUUG- -5'
29945 5' -56.5 NC_006273.1 + 197314 0.67 0.87604
Target:  5'- gGC-CGCGCGGCGGCugcuGCCcGAGcuGGACc -3'
miRNA:   3'- -UGuGUGCGUCGUCGu---CGGuCUC--CUUG- -5'
29945 5' -56.5 NC_006273.1 + 213343 0.67 0.87604
Target:  5'- aACACcaguaGCaCAGCAGguGgCAGAGGGAg -3'
miRNA:   3'- -UGUG-----UGcGUCGUCguCgGUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 163337 0.67 0.87604
Target:  5'- uACACugcuCGCucuGCGGCAGUCAGcGGGuaguGCg -3'
miRNA:   3'- -UGUGu---GCGu--CGUCGUCGGUC-UCCu---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.