miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 5' -56.5 NC_006273.1 + 10 0.71 0.700202
Target:  5'- cCGCAC-CGGCGGCGGUCGGggugugucGGGGGCg -3'
miRNA:   3'- uGUGUGcGUCGUCGUCGGUC--------UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 928 0.66 0.908873
Target:  5'- uCGguCGCGGCcGCggGGCCGGAGGGc- -3'
miRNA:   3'- uGUguGCGUCGuCG--UCGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 1318 0.7 0.719939
Target:  5'- cUACGCGCGGguGacgccgcgCAGCCAGAuGAACg -3'
miRNA:   3'- uGUGUGCGUCguC--------GUCGGUCUcCUUG- -5'
29945 5' -56.5 NC_006273.1 + 1948 0.68 0.837913
Target:  5'- cGCGCgguggcuggguuGCGCGGCGG-GGCCGGcgacGGGGACg -3'
miRNA:   3'- -UGUG------------UGCGUCGUCgUCGGUC----UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 2140 0.74 0.539704
Target:  5'- -gACGCGCAcGCGGUGGUCGGGGcGGACg -3'
miRNA:   3'- ugUGUGCGU-CGUCGUCGGUCUC-CUUG- -5'
29945 5' -56.5 NC_006273.1 + 2421 0.67 0.87604
Target:  5'- gGC-CGCGCGGCGGCugcuGCCcGAGcuGGACc -3'
miRNA:   3'- -UGuGUGCGUCGUCGu---CGGuCUC--CUUG- -5'
29945 5' -56.5 NC_006273.1 + 4944 0.69 0.821338
Target:  5'- aACGC-CGgAGCAGCAGCgAucuGGGGAAg -3'
miRNA:   3'- -UGUGuGCgUCGUCGUCGgU---CUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 7712 0.67 0.896411
Target:  5'- -gGC-CGCGGCAGCGG--GGAGGAGa -3'
miRNA:   3'- ugUGuGCGUCGUCGUCggUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 8172 0.67 0.896411
Target:  5'- gGCAuCACGUA-CGGCAGCU-GAGGAGa -3'
miRNA:   3'- -UGU-GUGCGUcGUCGUCGGuCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 14012 0.66 0.931024
Target:  5'- -gGCGCGgGGUGGCGGagcGGGGAGCg -3'
miRNA:   3'- ugUGUGCgUCGUCGUCgguCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 16883 0.76 0.401698
Target:  5'- aACACGgucUGCGGCGcGCGGCCAGGcuGGAACg -3'
miRNA:   3'- -UGUGU---GCGUCGU-CGUCGGUCU--CCUUG- -5'
29945 5' -56.5 NC_006273.1 + 18905 0.66 0.935979
Target:  5'- uCACACGCuc--GCAGCUAGAG-AGCg -3'
miRNA:   3'- uGUGUGCGucguCGUCGGUCUCcUUG- -5'
29945 5' -56.5 NC_006273.1 + 22142 0.7 0.748971
Target:  5'- -uGCGguaGCGGCGGCGGCCGucucuGAGGAAg -3'
miRNA:   3'- ugUGUg--CGUCGUCGUCGGU-----CUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 28824 0.66 0.914759
Target:  5'- aACGCA-GCGGCucggGGCAGC-AGAGGuAGCu -3'
miRNA:   3'- -UGUGUgCGUCG----UCGUCGgUCUCC-UUG- -5'
29945 5' -56.5 NC_006273.1 + 29816 0.68 0.84593
Target:  5'- gGCugGgagugGUGGCGGCAGCCacGGAGGAGa -3'
miRNA:   3'- -UGugUg----CGUCGUCGUCGG--UCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 33498 0.66 0.920414
Target:  5'- aGCgACACGCuGCGGUAGUC--GGGAAUc -3'
miRNA:   3'- -UG-UGUGCGuCGUCGUCGGucUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 33758 0.69 0.79255
Target:  5'- -gGCGCGCAGCAGCcgaaugauacgcagGGCCAGcacggcguuGGAGg -3'
miRNA:   3'- ugUGUGCGUCGUCG--------------UCGGUCu--------CCUUg -5'
29945 5' -56.5 NC_006273.1 + 34627 0.74 0.50001
Target:  5'- cCACACGCuacuucucagcgaAGCAcugcuGCAGCCAGAccGGAGCg -3'
miRNA:   3'- uGUGUGCG-------------UCGU-----CGUCGGUCU--CCUUG- -5'
29945 5' -56.5 NC_006273.1 + 35891 0.76 0.410205
Target:  5'- uGC-CGUGCAGCGGCGGCCAGcacagcGGGAGCc -3'
miRNA:   3'- -UGuGUGCGUCGUCGUCGGUC------UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 36397 0.66 0.920414
Target:  5'- aGCACugGCAGgGGUGGCaaaacgCAGuuGAGCg -3'
miRNA:   3'- -UGUGugCGUCgUCGUCG------GUCucCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.