miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 5' -56.5 NC_006273.1 + 36730 0.67 0.885792
Target:  5'- gGCGCGCG-AGCGGCGGCaCAGcucggcccgauggucGGGAuGCa -3'
miRNA:   3'- -UGUGUGCgUCGUCGUCG-GUC---------------UCCU-UG- -5'
29945 5' -56.5 NC_006273.1 + 38199 0.66 0.911255
Target:  5'- cGCGC-CGCGGCcgcucauccggagacGGCGgaaaccgcggcGCCGGAGGAAa -3'
miRNA:   3'- -UGUGuGCGUCG---------------UCGU-----------CGGUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 40605 0.67 0.882358
Target:  5'- aACACcgACGCGGCuGCcccGGCCuuucaccggagacGGGGGGGCa -3'
miRNA:   3'- -UGUG--UGCGUCGuCG---UCGG-------------UCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 41360 0.66 0.935979
Target:  5'- cCACGCGCGuucGC-GCGGCCAGuuggcGGggUu -3'
miRNA:   3'- uGUGUGCGU---CGuCGUCGGUCu----CCuuG- -5'
29945 5' -56.5 NC_006273.1 + 41504 0.7 0.729702
Target:  5'- gACAgGCGUcggcgugaggauGGCAGCGccggcGCCAGcAGGAACg -3'
miRNA:   3'- -UGUgUGCG------------UCGUCGU-----CGGUC-UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 42662 1.08 0.003735
Target:  5'- cACACACGCAGCAGCAGCCAGAGGAACc -3'
miRNA:   3'- -UGUGUGCGUCGUCGUCGGUCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 44434 0.73 0.559457
Target:  5'- aGCGCAUGCGGCAguguuuccGCGGCCAGuugcuGGAc- -3'
miRNA:   3'- -UGUGUGCGUCGU--------CGUCGGUCu----CCUug -5'
29945 5' -56.5 NC_006273.1 + 44519 0.67 0.883049
Target:  5'- cGCGCACGuCGGCGGCgauAGCCAuGAGu--- -3'
miRNA:   3'- -UGUGUGC-GUCGUCG---UCGGU-CUCcuug -5'
29945 5' -56.5 NC_006273.1 + 45621 0.68 0.853758
Target:  5'- -aACAacaGCAGCAGCA-UCAGAccGGAACg -3'
miRNA:   3'- ugUGUg--CGUCGUCGUcGGUCU--CCUUG- -5'
29945 5' -56.5 NC_006273.1 + 45886 0.7 0.739382
Target:  5'- cACACAgCGCGGCGGCcgGGCCGccGAGGccGAUg -3'
miRNA:   3'- -UGUGU-GCGUCGUCG--UCGGU--CUCC--UUG- -5'
29945 5' -56.5 NC_006273.1 + 48651 0.79 0.288272
Target:  5'- gGCGCACGCAGCGgucGCAGgacgggauaucCCAGAGGAAg -3'
miRNA:   3'- -UGUGUGCGUCGU---CGUC-----------GGUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 58138 0.74 0.539704
Target:  5'- gGCACGCGCAGCGGCcuCCGcaccacgguGGGGAAg -3'
miRNA:   3'- -UGUGUGCGUCGUCGucGGU---------CUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 63941 0.66 0.931024
Target:  5'- cGCGUACGuCAGauCAGCAGCgacaCAGAGGAAg -3'
miRNA:   3'- -UGUGUGC-GUC--GUCGUCG----GUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 63989 0.73 0.589441
Target:  5'- ---aAUGCAGCAGUGG-CGGAGGAGCa -3'
miRNA:   3'- ugugUGCGUCGUCGUCgGUCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 64256 0.7 0.767839
Target:  5'- gGCACGggcguUGCGGCGGCGGCCGaAGcGGAUg -3'
miRNA:   3'- -UGUGU-----GCGUCGUCGUCGGUcUC-CUUG- -5'
29945 5' -56.5 NC_006273.1 + 64843 0.68 0.861389
Target:  5'- aGC-CugGCcaucgaGGCAGCcauccaGGCCuGAGGAACa -3'
miRNA:   3'- -UGuGugCG------UCGUCG------UCGGuCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 66681 0.66 0.925836
Target:  5'- gACACGCGUAcCAGCaAGCCAcgcagcaaaacGAGGGu- -3'
miRNA:   3'- -UGUGUGCGUcGUCG-UCGGU-----------CUCCUug -5'
29945 5' -56.5 NC_006273.1 + 68054 0.75 0.491466
Target:  5'- -uGCACGCuaccGCAGCAGUCaacagaagauGGAGGGACa -3'
miRNA:   3'- ugUGUGCGu---CGUCGUCGG----------UCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 69444 0.68 0.829713
Target:  5'- gGCGC-CGCuGUAGCGGC-GGAGGAc- -3'
miRNA:   3'- -UGUGuGCGuCGUCGUCGgUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 69703 0.68 0.837101
Target:  5'- cGCcgauCGCGUAgGCAGCGGCgaagguggugacgUAGGGGAACa -3'
miRNA:   3'- -UGu---GUGCGU-CGUCGUCG-------------GUCUCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.