miRNA display CGI


Results 1 - 20 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 5' -56.5 NC_006273.1 + 234841 0.71 0.700202
Target:  5'- cCGCAC-CGGCGGCGGUCGGggugugucGGGGGCg -3'
miRNA:   3'- uGUGUGcGUCGUCGUCGGUC--------UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 230671 0.67 0.883049
Target:  5'- -aGCAgGCGGaccgAGCCAGAGGGACc -3'
miRNA:   3'- ugUGUgCGUCgucgUCGGUCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 229187 0.75 0.454359
Target:  5'- -aGCAC-UAGCAGCGGCCAGAGuAGCg -3'
miRNA:   3'- ugUGUGcGUCGUCGUCGGUCUCcUUG- -5'
29945 5' -56.5 NC_006273.1 + 217415 0.69 0.812795
Target:  5'- -uGCACGUAGguucuCAGC-GCCGGAGGAu- -3'
miRNA:   3'- ugUGUGCGUC-----GUCGuCGGUCUCCUug -5'
29945 5' -56.5 NC_006273.1 + 217289 0.67 0.883049
Target:  5'- uCAU-CGCAGCagagauagucGGCGGCCAGAG-AACg -3'
miRNA:   3'- uGUGuGCGUCG----------UCGUCGGUCUCcUUG- -5'
29945 5' -56.5 NC_006273.1 + 214156 0.68 0.84593
Target:  5'- -gGCGaucaGCAGCGGCAGCCAcAGcGGCg -3'
miRNA:   3'- ugUGUg---CGUCGUCGUCGGUcUCcUUG- -5'
29945 5' -56.5 NC_006273.1 + 214083 0.7 0.739382
Target:  5'- cGCGCAC-CGGCuGCAGaCAGGGcGAACg -3'
miRNA:   3'- -UGUGUGcGUCGuCGUCgGUCUC-CUUG- -5'
29945 5' -56.5 NC_006273.1 + 213546 0.71 0.700202
Target:  5'- uCGCACGagGGCAGCAGaCCcGAGGuGCg -3'
miRNA:   3'- uGUGUGCg-UCGUCGUC-GGuCUCCuUG- -5'
29945 5' -56.5 NC_006273.1 + 213343 0.67 0.87604
Target:  5'- aACACcaguaGCaCAGCAGguGgCAGAGGGAg -3'
miRNA:   3'- -UGUG-----UGcGUCGUCguCgGUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 209644 0.66 0.935494
Target:  5'- uACGC-CGguGCAGCugagaaaGGCCAGuaaGGuGAACa -3'
miRNA:   3'- -UGUGuGCguCGUCG-------UCGGUC---UC-CUUG- -5'
29945 5' -56.5 NC_006273.1 + 209421 0.67 0.887826
Target:  5'- aGCGCGCGUuccAGCGGCgucucguagcguacAGCCAGGGccGCu -3'
miRNA:   3'- -UGUGUGCG---UCGUCG--------------UCGGUCUCcuUG- -5'
29945 5' -56.5 NC_006273.1 + 204175 0.68 0.837913
Target:  5'- uUACcCGCAGCGGCAaCCAGGGcAGCc -3'
miRNA:   3'- uGUGuGCGUCGUCGUcGGUCUCcUUG- -5'
29945 5' -56.5 NC_006273.1 + 203138 0.66 0.908873
Target:  5'- uAguCGCGCGGUGGCAGCgGGGGuGGu- -3'
miRNA:   3'- -UguGUGCGUCGUCGUCGgUCUC-CUug -5'
29945 5' -56.5 NC_006273.1 + 201036 0.71 0.670199
Target:  5'- -gACGCGCAcccauuacuuGCGGCAGCUAugcucgaugaccGAGGAGCu -3'
miRNA:   3'- ugUGUGCGU----------CGUCGUCGGU------------CUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 200465 0.79 0.275203
Target:  5'- cCAC-CGCuaaccCAGCAGCCGGAGGAGCa -3'
miRNA:   3'- uGUGuGCGuc---GUCGUCGGUCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 197314 0.67 0.87604
Target:  5'- gGC-CGCGCGGCGGCugcuGCCcGAGcuGGACc -3'
miRNA:   3'- -UGuGUGCGUCGUCGu---CGGuCUC--CUUG- -5'
29945 5' -56.5 NC_006273.1 + 197033 0.74 0.539704
Target:  5'- -gACGCGCAcGCGGUGGUCGGGGcGGACg -3'
miRNA:   3'- ugUGUGCGU-CGUCGUCGGUCUC-CUUG- -5'
29945 5' -56.5 NC_006273.1 + 196990 0.69 0.821338
Target:  5'- cCAC-CGCAGCGGCGGCgaCGGAcGGcGGCg -3'
miRNA:   3'- uGUGuGCGUCGUCGUCG--GUCU-CC-UUG- -5'
29945 5' -56.5 NC_006273.1 + 196840 0.68 0.837913
Target:  5'- cGCGCgguggcuggguuGCGCGGCGG-GGCCGGcgacGGGGACg -3'
miRNA:   3'- -UGUG------------UGCGUCGUCgUCGGUC----UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 196211 0.7 0.719939
Target:  5'- cUACGCGCGGguGacgccgcgCAGCCAGAuGAACg -3'
miRNA:   3'- uGUGUGCGUCguC--------GUCGGUCUcCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.