miRNA display CGI


Results 1 - 20 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29945 5' -56.5 NC_006273.1 + 45886 0.7 0.739382
Target:  5'- cACACAgCGCGGCGGCcgGGCCGccGAGGccGAUg -3'
miRNA:   3'- -UGUGU-GCGUCGUCG--UCGGU--CUCC--UUG- -5'
29945 5' -56.5 NC_006273.1 + 44434 0.73 0.559457
Target:  5'- aGCGCAUGCGGCAguguuuccGCGGCCAGuugcuGGAc- -3'
miRNA:   3'- -UGUGUGCGUCGU--------CGUCGGUCu----CCUug -5'
29945 5' -56.5 NC_006273.1 + 111962 0.71 0.670199
Target:  5'- uGC-CGCGCGGUGGCGGUCaAGucuGGAGCg -3'
miRNA:   3'- -UGuGUGCGUCGUCGUCGG-UCu--CCUUG- -5'
29945 5' -56.5 NC_006273.1 + 163137 0.71 0.670199
Target:  5'- gGCugAgGCGGCGgaggcaccaccGCAGUCGGAGGAGg -3'
miRNA:   3'- -UGugUgCGUCGU-----------CGUCGGUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 192093 0.71 0.680242
Target:  5'- --uUACGCAGCAGCAGgCAcgcaacGGGAGCg -3'
miRNA:   3'- uguGUGCGUCGUCGUCgGUc-----UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 194903 0.71 0.700202
Target:  5'- cCGCAC-CGGCGGCGGUCGGggugugucGGGGGCg -3'
miRNA:   3'- uGUGUGcGUCGUCGUCGGUC--------UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 150488 0.71 0.710103
Target:  5'- ---aGCGCGGUGGCAGCUuGGGGggUg -3'
miRNA:   3'- ugugUGCGUCGUCGUCGGuCUCCuuG- -5'
29945 5' -56.5 NC_006273.1 + 196211 0.7 0.719939
Target:  5'- cUACGCGCGGguGacgccgcgCAGCCAGAuGAACg -3'
miRNA:   3'- uGUGUGCGUCguC--------GUCGGUCUcCUUG- -5'
29945 5' -56.5 NC_006273.1 + 41504 0.7 0.729702
Target:  5'- gACAgGCGUcggcgugaggauGGCAGCGccggcGCCAGcAGGAACg -3'
miRNA:   3'- -UGUgUGCG------------UCGUCGU-----CGGUC-UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 112596 0.74 0.539704
Target:  5'- gGCugGCGCAGUgcgccgAGCAGCCGuugcccGGGAACg -3'
miRNA:   3'- -UGugUGCGUCG------UCGUCGGUc-----UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 102288 0.74 0.539704
Target:  5'- -gACGCGUGGCGGCGGUgaCAGGGGcAACg -3'
miRNA:   3'- ugUGUGCGUCGUCGUCG--GUCUCC-UUG- -5'
29945 5' -56.5 NC_006273.1 + 58138 0.74 0.539704
Target:  5'- gGCACGCGCAGCGGCcuCCGcaccacgguGGGGAAg -3'
miRNA:   3'- -UGUGUGCGUCGUCGucGGU---------CUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 105418 0.77 0.385026
Target:  5'- aGCcCGUGCAGCAGCAGCCccAGGGACg -3'
miRNA:   3'- -UGuGUGCGUCGUCGUCGGucUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 35891 0.76 0.410205
Target:  5'- uGC-CGUGCAGCGGCGGCCAGcacagcGGGAGCc -3'
miRNA:   3'- -UGuGUGCGUCGUCGUCGGUC------UCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 104882 0.75 0.44532
Target:  5'- uCACACGCGGcCGGCGGCC-GAGGuggaguGCa -3'
miRNA:   3'- uGUGUGCGUC-GUCGUCGGuCUCCu-----UG- -5'
29945 5' -56.5 NC_006273.1 + 229187 0.75 0.454359
Target:  5'- -aGCAC-UAGCAGCGGCCAGAGuAGCg -3'
miRNA:   3'- ugUGUGcGUCGUCGUCGGUCUCcUUG- -5'
29945 5' -56.5 NC_006273.1 + 139588 0.75 0.482053
Target:  5'- --uUAgGCGGCAGCGGCgAGAGGAGa -3'
miRNA:   3'- uguGUgCGUCGUCGUCGgUCUCCUUg -5'
29945 5' -56.5 NC_006273.1 + 68054 0.75 0.491466
Target:  5'- -uGCACGCuaccGCAGCAGUCaacagaagauGGAGGGACa -3'
miRNA:   3'- ugUGUGCGu---CGUCGUCGG----------UCUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 190205 0.74 0.510539
Target:  5'- aACACGCugaaCAGCAGCGGCUAcAGGGGCc -3'
miRNA:   3'- -UGUGUGc---GUCGUCGUCGGUcUCCUUG- -5'
29945 5' -56.5 NC_006273.1 + 197033 0.74 0.539704
Target:  5'- -gACGCGCAcGCGGUGGUCGGGGcGGACg -3'
miRNA:   3'- ugUGUGCGU-CGUCGUCGGUCUC-CUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.