Results 1 - 20 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29945 | 5' | -56.5 | NC_006273.1 | + | 42662 | 1.08 | 0.003735 |
Target: 5'- cACACACGCAGCAGCAGCCAGAGGAACc -3' miRNA: 3'- -UGUGUGCGUCGUCGUCGGUCUCCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 1318 | 0.7 | 0.719939 |
Target: 5'- cUACGCGCGGguGacgccgcgCAGCCAGAuGAACg -3' miRNA: 3'- uGUGUGCGUCguC--------GUCGGUCUcCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 214083 | 0.7 | 0.739382 |
Target: 5'- cGCGCAC-CGGCuGCAGaCAGGGcGAACg -3' miRNA: 3'- -UGUGUGcGUCGuCGUCgGUCUC-CUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 73187 | 0.66 | 0.935979 |
Target: 5'- gUAgACGCGGCGccGCAaccaccgccuccGCCGGAGGAu- -3' miRNA: 3'- uGUgUGCGUCGU--CGU------------CGGUCUCCUug -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 16883 | 0.76 | 0.401698 |
Target: 5'- aACACGgucUGCGGCGcGCGGCCAGGcuGGAACg -3' miRNA: 3'- -UGUGU---GCGUCGU-CGUCGGUCU--CCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 188618 | 0.76 | 0.418822 |
Target: 5'- uGCGCGCGCGGCAG-AGUCGGAuGAGCc -3' miRNA: 3'- -UGUGUGCGUCGUCgUCGGUCUcCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 34627 | 0.74 | 0.50001 |
Target: 5'- cCACACGCuacuucucagcgaAGCAcugcuGCAGCCAGAccGGAGCg -3' miRNA: 3'- uGUGUGCG-------------UCGU-----CGUCGGUCU--CCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 2140 | 0.74 | 0.539704 |
Target: 5'- -gACGCGCAcGCGGUGGUCGGGGcGGACg -3' miRNA: 3'- ugUGUGCGU-CGUCGUCGGUCUC-CUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 169477 | 0.72 | 0.62374 |
Target: 5'- uGCAUGCGCuGCAgauccaggccgugguGCAGCCAGuuGAGCa -3' miRNA: 3'- -UGUGUGCGuCGU---------------CGUCGGUCucCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 234841 | 0.71 | 0.700202 |
Target: 5'- cCGCAC-CGGCGGCGGUCGGggugugucGGGGGCg -3' miRNA: 3'- uGUGUGcGUCGUCGUCGGUC--------UCCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 201036 | 0.71 | 0.670199 |
Target: 5'- -gACGCGCAcccauuacuuGCGGCAGCUAugcucgaugaccGAGGAGCu -3' miRNA: 3'- ugUGUGCGU----------CGUCGUCGGU------------CUCCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 82053 | 0.72 | 0.619695 |
Target: 5'- -aGCG-GCAGCGGCGGCagaAGAGGAGa -3' miRNA: 3'- ugUGUgCGUCGUCGUCGg--UCUCCUUg -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 200465 | 0.79 | 0.275203 |
Target: 5'- cCAC-CGCuaaccCAGCAGCCGGAGGAGCa -3' miRNA: 3'- uGUGuGCGuc---GUCGUCGGUCUCCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 213546 | 0.71 | 0.700202 |
Target: 5'- uCGCACGagGGCAGCAGaCCcGAGGuGCg -3' miRNA: 3'- uGUGUGCg-UCGUCGUC-GGuCUCCuUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 162206 | 0.79 | 0.301824 |
Target: 5'- gGC-CGCGguGCGcuGCAGCCGGAGGAAg -3' miRNA: 3'- -UGuGUGCguCGU--CGUCGGUCUCCUUg -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 63989 | 0.73 | 0.589441 |
Target: 5'- ---aAUGCAGCAGUGG-CGGAGGAGCa -3' miRNA: 3'- ugugUGCGUCGUCGUCgGUCUCCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 10 | 0.71 | 0.700202 |
Target: 5'- cCGCAC-CGGCGGCGGUCGGggugugucGGGGGCg -3' miRNA: 3'- uGUGUGcGUCGUCGUCGGUC--------UCCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 148012 | 0.7 | 0.739382 |
Target: 5'- uGCGC-CGCaAGCGGCGGCaaCAGcuucGGGAGCa -3' miRNA: 3'- -UGUGuGCG-UCGUCGUCG--GUC----UCCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 186065 | 0.78 | 0.330386 |
Target: 5'- cGCGCGgGCGGCAGCAuCCAGAccauGGAGCu -3' miRNA: 3'- -UGUGUgCGUCGUCGUcGGUCU----CCUUG- -5' |
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29945 | 5' | -56.5 | NC_006273.1 | + | 80399 | 0.75 | 0.482053 |
Target: 5'- -gGCG-GCGGCAGCGGCgCAGAGcGAACu -3' miRNA: 3'- ugUGUgCGUCGUCGUCG-GUCUC-CUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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