miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 140645 0.66 0.969158
Target:  5'- gGGCGGGCcgggaagGGGAGCUggGugGgGGAUCCc -3'
miRNA:   3'- -CUGUUCGa------CCUUCGG--CugCgUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 118689 0.66 0.969158
Target:  5'- cGugGGguGCUGGAAGUgGAaGCGGugCUg -3'
miRNA:   3'- -CugUU--CGACCUUCGgCUgCGUCugGG- -5'
29946 5' -55.6 NC_006273.1 + 73244 0.66 0.969158
Target:  5'- aGAgGGGC-GcGAAGagaCGGCGCAGAgCCu -3'
miRNA:   3'- -CUgUUCGaC-CUUCg--GCUGCGUCUgGG- -5'
29946 5' -55.6 NC_006273.1 + 194247 0.66 0.969158
Target:  5'- aGCGAGgaGGAAGaCGACGacuccuCGGACaCCg -3'
miRNA:   3'- cUGUUCgaCCUUCgGCUGC------GUCUG-GG- -5'
29946 5' -55.6 NC_006273.1 + 211282 0.66 0.969158
Target:  5'- -cCGAaaUGGAGGCCGcguUGguGGCCCc -3'
miRNA:   3'- cuGUUcgACCUUCGGCu--GCguCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 105662 0.66 0.969158
Target:  5'- gGACAGGCacGGuagaGAGCCGcaaaaacaGCGCGcACCCg -3'
miRNA:   3'- -CUGUUCGa-CC----UUCGGC--------UGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 158250 0.66 0.969158
Target:  5'- cGACGgcgguucgccguGGUUGuuGGCCGACGUAGcGCCg -3'
miRNA:   3'- -CUGU------------UCGACcuUCGGCUGCGUC-UGGg -5'
29946 5' -55.6 NC_006273.1 + 163413 0.66 0.969158
Target:  5'- cGC-AGCUGucuccacAGCCGGCGUuGGCCCc -3'
miRNA:   3'- cUGuUCGACcu-----UCGGCUGCGuCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 183022 0.66 0.966142
Target:  5'- aGCcuGCUGGAcgaGGCCGagugGCGaCAGACgCa -3'
miRNA:   3'- cUGuuCGACCU---UCGGC----UGC-GUCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 218799 0.66 0.966142
Target:  5'- -cCAAGCgGGcGGCUGGCGCuaccucgaaGGGCCa -3'
miRNA:   3'- cuGUUCGaCCuUCGGCUGCG---------UCUGGg -5'
29946 5' -55.6 NC_006273.1 + 191468 0.66 0.966142
Target:  5'- uGGCcugauGgUGGAAGUCGGCGCcgccgccgcuuGGACCUu -3'
miRNA:   3'- -CUGuu---CgACCUUCGGCUGCG-----------UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 197263 0.66 0.966142
Target:  5'- gGGCGuGCUGGGcgcGCUGGCGCugGGGCgCg -3'
miRNA:   3'- -CUGUuCGACCUu--CGGCUGCG--UCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 2370 0.66 0.966142
Target:  5'- gGGCGuGCUGGGcgcGCUGGCGCugGGGCgCg -3'
miRNA:   3'- -CUGUuCGACCUu--CGGCUGCG--UCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 156335 0.66 0.966142
Target:  5'- cGCAGGCucUGGuGGC--GCGUGGGCCCa -3'
miRNA:   3'- cUGUUCG--ACCuUCGgcUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 169563 0.66 0.966142
Target:  5'- cGCcuGCUGcGccGCCGAUuGCGGACCg -3'
miRNA:   3'- cUGuuCGAC-CuuCGGCUG-CGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 197193 0.66 0.966142
Target:  5'- gGAUGAGC-GGccG-CGGCGCGGGCUCg -3'
miRNA:   3'- -CUGUUCGaCCuuCgGCUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 35456 0.66 0.966142
Target:  5'- uACAAGCgGGcGAGCCGcccAgGCGGAUCUu -3'
miRNA:   3'- cUGUUCGaCC-UUCGGC---UgCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 163021 0.66 0.962924
Target:  5'- gGACAcGC-GGgcGCCGGacaGCAGGCgCa -3'
miRNA:   3'- -CUGUuCGaCCuuCGGCUg--CGUCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 166643 0.66 0.962924
Target:  5'- cGACccgcGGCgUGGAcgcGCCGugGCAGucGCCUc -3'
miRNA:   3'- -CUGu---UCG-ACCUu--CGGCugCGUC--UGGG- -5'
29946 5' -55.6 NC_006273.1 + 164763 0.66 0.962924
Target:  5'- gGGCAAGCUgaGGAAGCggauccaguCGGCGCucAGACa- -3'
miRNA:   3'- -CUGUUCGA--CCUUCG---------GCUGCG--UCUGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.