miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 163413 0.66 0.969158
Target:  5'- cGC-AGCUGucuccacAGCCGGCGUuGGCCCc -3'
miRNA:   3'- cUGuUCGACcu-----UCGGCUGCGuCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 36287 0.66 0.952011
Target:  5'- aGCGAGCUGcgguccacGggGCCGAUGCu--CUCg -3'
miRNA:   3'- cUGUUCGAC--------CuuCGGCUGCGucuGGG- -5'
29946 5' -55.6 NC_006273.1 + 194247 0.66 0.969158
Target:  5'- aGCGAGgaGGAAGaCGACGacuccuCGGACaCCg -3'
miRNA:   3'- cUGUUCgaCCUUCgGCUGC------GUCUG-GG- -5'
29946 5' -55.6 NC_006273.1 + 103566 0.66 0.955863
Target:  5'- uGCGGGCUGGucGCCGAguggGgGGAUUCg -3'
miRNA:   3'- cUGUUCGACCuuCGGCUg---CgUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 196478 0.66 0.962924
Target:  5'- gGACGAG-UGGuuucGGCaCGGCGCGGGCg- -3'
miRNA:   3'- -CUGUUCgACCu---UCG-GCUGCGUCUGgg -5'
29946 5' -55.6 NC_006273.1 + 35800 0.66 0.9595
Target:  5'- uACAAGC-GGccAGCCuGGCGCAGGCa- -3'
miRNA:   3'- cUGUUCGaCCu-UCGG-CUGCGUCUGgg -5'
29946 5' -55.6 NC_006273.1 + 197263 0.66 0.966142
Target:  5'- gGGCGuGCUGGGcgcGCUGGCGCugGGGCgCg -3'
miRNA:   3'- -CUGUuCGACCUu--CGGCUGCG--UCUGgG- -5'
29946 5' -55.6 NC_006273.1 + 35456 0.66 0.966142
Target:  5'- uACAAGCgGGcGAGCCGcccAgGCGGAUCUu -3'
miRNA:   3'- cUGUUCGaCC-UUCGGC---UgCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 191468 0.66 0.966142
Target:  5'- uGGCcugauGgUGGAAGUCGGCGCcgccgccgcuuGGACCUu -3'
miRNA:   3'- -CUGuu---CgACCUUCGGCUGCG-----------UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 202461 0.66 0.952011
Target:  5'- cGACGuagaauaCUGGAAGCUGcuggUGguGACCCa -3'
miRNA:   3'- -CUGUuc-----GACCUUCGGCu---GCguCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 87881 0.66 0.952011
Target:  5'- aGCGAGCgGGccGCCGcuauCGCcauGGCCCc -3'
miRNA:   3'- cUGUUCGaCCuuCGGCu---GCGu--CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 66823 0.66 0.955863
Target:  5'- aGCucAGCUGGAAGCgcuaggCGGCcuGCAGcuACCCg -3'
miRNA:   3'- cUGu-UCGACCUUCG------GCUG--CGUC--UGGG- -5'
29946 5' -55.6 NC_006273.1 + 115693 0.66 0.952011
Target:  5'- aGACGccCUGGAgcAGCUGGCcuguuCGGACCCu -3'
miRNA:   3'- -CUGUucGACCU--UCGGCUGc----GUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 136025 0.66 0.952011
Target:  5'- aGACAGcGCU---GGCCGAucCGCGGGCCg -3'
miRNA:   3'- -CUGUU-CGAccuUCGGCU--GCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 218799 0.66 0.966142
Target:  5'- -cCAAGCgGGcGGCUGGCGCuaccucgaaGGGCCa -3'
miRNA:   3'- cuGUUCGaCCuUCGGCUGCG---------UCUGGg -5'
29946 5' -55.6 NC_006273.1 + 32680 0.66 0.955863
Target:  5'- -cCGAGC-GGuuGCCguGACGCAGucuGCCCu -3'
miRNA:   3'- cuGUUCGaCCuuCGG--CUGCGUC---UGGG- -5'
29946 5' -55.6 NC_006273.1 + 164763 0.66 0.962924
Target:  5'- gGGCAAGCUgaGGAAGCggauccaguCGGCGCucAGACa- -3'
miRNA:   3'- -CUGUUCGA--CCUUCG---------GCUGCG--UCUGgg -5'
29946 5' -55.6 NC_006273.1 + 211282 0.66 0.969158
Target:  5'- -cCGAaaUGGAGGCCGcguUGguGGCCCc -3'
miRNA:   3'- cuGUUcgACCUUCGGCu--GCguCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 73244 0.66 0.969158
Target:  5'- aGAgGGGC-GcGAAGagaCGGCGCAGAgCCu -3'
miRNA:   3'- -CUgUUCGaC-CUUCg--GCUGCGUCUgGG- -5'
29946 5' -55.6 NC_006273.1 + 104481 0.66 0.955863
Target:  5'- uGACcAGCaGGggGaaGACGCAGuggUCCg -3'
miRNA:   3'- -CUGuUCGaCCuuCggCUGCGUCu--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.