Results 21 - 40 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29946 | 5' | -55.6 | NC_006273.1 | + | 172582 | 0.66 | 0.962924 |
Target: 5'- uGGCcGGCUGGAucagcGCCauuuguGCGUAGGCCg -3' miRNA: 3'- -CUGuUCGACCUu----CGGc-----UGCGUCUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 156335 | 0.66 | 0.966142 |
Target: 5'- cGCAGGCucUGGuGGC--GCGUGGGCCCa -3' miRNA: 3'- cUGUUCG--ACCuUCGgcUGCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 183022 | 0.66 | 0.966142 |
Target: 5'- aGCcuGCUGGAcgaGGCCGagugGCGaCAGACgCa -3' miRNA: 3'- cUGuuCGACCU---UCGGC----UGC-GUCUGgG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 163021 | 0.66 | 0.962924 |
Target: 5'- gGACAcGC-GGgcGCCGGacaGCAGGCgCa -3' miRNA: 3'- -CUGUuCGaCCuuCGGCUg--CGUCUGgG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 1585 | 0.66 | 0.962924 |
Target: 5'- gGACGAG-UGGuuucGGCaCGGCGCGGGCg- -3' miRNA: 3'- -CUGUUCgACCu---UCG-GCUGCGUCUGgg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 158250 | 0.66 | 0.969158 |
Target: 5'- cGACGgcgguucgccguGGUUGuuGGCCGACGUAGcGCCg -3' miRNA: 3'- -CUGU------------UCGACcuUCGGCUGCGUC-UGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 206413 | 0.66 | 0.955863 |
Target: 5'- cGACc-GCUGGAGGCCuccuaaGACGUcgcGACCg -3' miRNA: 3'- -CUGuuCGACCUUCGG------CUGCGu--CUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 2370 | 0.66 | 0.966142 |
Target: 5'- gGGCGuGCUGGGcgcGCUGGCGCugGGGCgCg -3' miRNA: 3'- -CUGUuCGACCUu--CGGCUGCG--UCUGgG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 118961 | 0.66 | 0.962924 |
Target: 5'- aGCGGGCgagaAAGCCGcccACGUAGACCg -3' miRNA: 3'- cUGUUCGacc-UUCGGC---UGCGUCUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 29297 | 0.66 | 0.955863 |
Target: 5'- aGAC--GCUGGAGGgCuACGCGGAUCg -3' miRNA: 3'- -CUGuuCGACCUUCgGcUGCGUCUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 105662 | 0.66 | 0.969158 |
Target: 5'- gGACAGGCacGGuagaGAGCCGcaaaaacaGCGCGcACCCg -3' miRNA: 3'- -CUGUUCGa-CC----UUCGGC--------UGCGUcUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 194247 | 0.66 | 0.969158 |
Target: 5'- aGCGAGgaGGAAGaCGACGacuccuCGGACaCCg -3' miRNA: 3'- cUGUUCgaCCUUCgGCUGC------GUCUG-GG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 169563 | 0.66 | 0.966142 |
Target: 5'- cGCcuGCUGcGccGCCGAUuGCGGACCg -3' miRNA: 3'- cUGuuCGAC-CuuCGGCUG-CGUCUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 83339 | 0.66 | 0.962924 |
Target: 5'- cGGCGuGgUGGGAcccggcggcGCCGugGUgggaGGACCCg -3' miRNA: 3'- -CUGUuCgACCUU---------CGGCugCG----UCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 202461 | 0.66 | 0.952011 |
Target: 5'- cGACGuagaauaCUGGAAGCUGcuggUGguGACCCa -3' miRNA: 3'- -CUGUuc-----GACCUUCGGCu---GCguCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 166643 | 0.66 | 0.962924 |
Target: 5'- cGACccgcGGCgUGGAcgcGCCGugGCAGucGCCUc -3' miRNA: 3'- -CUGu---UCG-ACCUu--CGGCugCGUC--UGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 172110 | 0.66 | 0.962924 |
Target: 5'- aGCAGGgaGGcguAGuuGACGCGG-CCUu -3' miRNA: 3'- cUGUUCgaCCu--UCggCUGCGUCuGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 197193 | 0.66 | 0.966142 |
Target: 5'- gGAUGAGC-GGccG-CGGCGCGGGCUCg -3' miRNA: 3'- -CUGUUCGaCCuuCgGCUGCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 87881 | 0.66 | 0.952011 |
Target: 5'- aGCGAGCgGGccGCCGcuauCGCcauGGCCCc -3' miRNA: 3'- cUGUUCGaCCuuCGGCu---GCGu--CUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 38139 | 0.67 | 0.939127 |
Target: 5'- -uCGGGCcgGcGAGGCCGACGCGGuuuauauacACCg -3' miRNA: 3'- cuGUUCGa-C-CUUCGGCUGCGUC---------UGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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