miRNA display CGI


Results 41 - 60 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 22000 0.67 0.939127
Target:  5'- aGAuCGGGCUGcuGGCCGcgggauCGguGGCCCu -3'
miRNA:   3'- -CU-GUUCGACcuUCGGCu-----GCguCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 38139 0.67 0.939127
Target:  5'- -uCGGGCcgGcGAGGCCGACGCGGuuuauauacACCg -3'
miRNA:   3'- cuGUUCGa-C-CUUCGGCUGCGUC---------UGGg -5'
29946 5' -55.6 NC_006273.1 + 149559 0.67 0.939127
Target:  5'- cGGCGguGGUagUGGcguGGgCGACGCGGACCa -3'
miRNA:   3'- -CUGU--UCG--ACCu--UCgGCUGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 205123 0.67 0.939127
Target:  5'- --gGAGgaGGGaucgGGUgaUGACGCAGGCCCc -3'
miRNA:   3'- cugUUCgaCCU----UCG--GCUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 123256 0.67 0.943645
Target:  5'- aGGCGcgccgaaauacGGCUGGuGAGUCcACGCGGcCCCg -3'
miRNA:   3'- -CUGU-----------UCGACC-UUCGGcUGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 141793 0.67 0.943645
Target:  5'- -uCAAGCcgcGGuacAGGCCG-CGCAGGCCg -3'
miRNA:   3'- cuGUUCGa--CC---UUCGGCuGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 168409 0.67 0.94752
Target:  5'- aGCAAGCaGuguucguguuccuGAAGCagcACGCGGACCCg -3'
miRNA:   3'- cUGUUCGaC-------------CUUCGgc-UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 100641 0.67 0.947939
Target:  5'- uGCAAGUUGGGAGCguuguauaCGGCGaAGAUCUu -3'
miRNA:   3'- cUGUUCGACCUUCG--------GCUGCgUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 79044 0.67 0.936307
Target:  5'- -cCAGGCUGGGcccacgcgccaccagAGCCugcGGCGuCAGGCCa -3'
miRNA:   3'- cuGUUCGACCU---------------UCGG---CUGC-GUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 75449 0.67 0.936307
Target:  5'- cACuAGCUGcggcGGAGCCGucgccggcaguagcaACGCAGgACCCg -3'
miRNA:   3'- cUGuUCGAC----CUUCGGC---------------UGCGUC-UGGG- -5'
29946 5' -55.6 NC_006273.1 + 216029 0.67 0.934382
Target:  5'- cGACGGGUaGGGAGCCuGGgaguccauCGCuucAGGCCCa -3'
miRNA:   3'- -CUGUUCGaCCUUCGG-CU--------GCG---UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 121890 0.67 0.947939
Target:  5'- cGACAugggcucuuGGCUGG-GGCaGAUGCuucGGCCCg -3'
miRNA:   3'- -CUGU---------UCGACCuUCGgCUGCGu--CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 192802 0.67 0.947939
Target:  5'- uGCAAGCUGcuggucaaGGAGCUG-CGCAuGugCCu -3'
miRNA:   3'- cUGUUCGAC--------CUUCGGCuGCGU-CugGG- -5'
29946 5' -55.6 NC_006273.1 + 179736 0.67 0.9289
Target:  5'- cGACAcgcagcccagccuAGCUcGGugaaGGGUCGACGCAcACCCg -3'
miRNA:   3'- -CUGU-------------UCGA-CC----UUCGGCUGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 211053 0.67 0.9289
Target:  5'- ----cGCUGGGucGCgGugggaaaGCGCAGACCCa -3'
miRNA:   3'- cuguuCGACCUu-CGgC-------UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 196622 0.67 0.92941
Target:  5'- gGACGggAGCUGc--GCCGGCGguGGgCCg -3'
miRNA:   3'- -CUGU--UCGACcuuCGGCUGCguCUgGG- -5'
29946 5' -55.6 NC_006273.1 + 218195 0.67 0.92941
Target:  5'- uGGCAugGGC-GGcGGCCGACGgCGGACgaCCg -3'
miRNA:   3'- -CUGU--UCGaCCuUCGGCUGC-GUCUG--GG- -5'
29946 5' -55.6 NC_006273.1 + 102330 0.67 0.92941
Target:  5'- cGGCGGGUggugGuGAAGCagguuACGCAGAUCCa -3'
miRNA:   3'- -CUGUUCGa---C-CUUCGgc---UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 147567 0.67 0.931426
Target:  5'- cGCGGGUcguuaaauacuacgaUGGGAGCCGcCGCGG-CUCa -3'
miRNA:   3'- cUGUUCG---------------ACCUUCGGCuGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 196810 0.67 0.934382
Target:  5'- cGGCuGGCUGGc-GCUgGGCGCGGugcuGCCCg -3'
miRNA:   3'- -CUGuUCGACCuuCGG-CUGCGUC----UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.