miRNA display CGI


Results 61 - 80 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 46469 0.67 0.943645
Target:  5'- ---cGGCUGGAcaccGCCgguGACGCccAGGCCCu -3'
miRNA:   3'- cuguUCGACCUu---CGG---CUGCG--UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 192802 0.67 0.947939
Target:  5'- uGCAAGCUGcuggucaaGGAGCUG-CGCAuGugCCu -3'
miRNA:   3'- cUGUUCGAC--------CUUCGGCuGCGU-CugGG- -5'
29946 5' -55.6 NC_006273.1 + 62326 0.67 0.947939
Target:  5'- aACAAGUUGGggGgUGcACuGCAGGCUa -3'
miRNA:   3'- cUGUUCGACCuuCgGC-UG-CGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 4832 0.67 0.947939
Target:  5'- aACGAGUccGGAGCC-AUGCGGACCa -3'
miRNA:   3'- cUGUUCGacCUUCGGcUGCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 211053 0.67 0.9289
Target:  5'- ----cGCUGGGucGCgGugggaaaGCGCAGACCCa -3'
miRNA:   3'- cuguuCGACCUu-CGgC-------UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 196622 0.67 0.92941
Target:  5'- gGACGggAGCUGc--GCCGGCGguGGgCCg -3'
miRNA:   3'- -CUGU--UCGACcuuCGGCUGCguCUgGG- -5'
29946 5' -55.6 NC_006273.1 + 22000 0.67 0.939127
Target:  5'- aGAuCGGGCUGcuGGCCGcgggauCGguGGCCCu -3'
miRNA:   3'- -CU-GUUCGACcuUCGGCu-----GCguCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 112233 0.67 0.937727
Target:  5'- uGGCAAuGCgcggcGGggGCUGGCGCgaggacgugcucauGGACCg -3'
miRNA:   3'- -CUGUU-CGa----CCuuCGGCUGCG--------------UCUGGg -5'
29946 5' -55.6 NC_006273.1 + 38139 0.67 0.939127
Target:  5'- -uCGGGCcgGcGAGGCCGACGCGGuuuauauacACCg -3'
miRNA:   3'- cuGUUCGa-C-CUUCGGCUGCGUC---------UGGg -5'
29946 5' -55.6 NC_006273.1 + 75449 0.67 0.936307
Target:  5'- cACuAGCUGcggcGGAGCCGucgccggcaguagcaACGCAGgACCCg -3'
miRNA:   3'- cUGuUCGAC----CUUCGGC---------------UGCGUC-UGGG- -5'
29946 5' -55.6 NC_006273.1 + 196810 0.67 0.934382
Target:  5'- cGGCuGGCUGGc-GCUgGGCGCGGugcuGCCCg -3'
miRNA:   3'- -CUGuUCGACCuuCGG-CUGCGUC----UGGG- -5'
29946 5' -55.6 NC_006273.1 + 147567 0.67 0.931426
Target:  5'- cGCGGGUcguuaaauacuacgaUGGGAGCCGcCGCGG-CUCa -3'
miRNA:   3'- cUGUUCG---------------ACCUUCGGCuGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 102330 0.67 0.92941
Target:  5'- cGGCGGGUggugGuGAAGCagguuACGCAGAUCCa -3'
miRNA:   3'- -CUGUUCGa---C-CUUCGgc---UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 218195 0.67 0.92941
Target:  5'- uGGCAugGGC-GGcGGCCGACGgCGGACgaCCg -3'
miRNA:   3'- -CUGU--UCGaCCuUCGGCUGC-GUCUG--GG- -5'
29946 5' -55.6 NC_006273.1 + 163850 0.68 0.894804
Target:  5'- cGGC-AGC-GGccGCCGGCGaGGGCCCu -3'
miRNA:   3'- -CUGuUCGaCCuuCGGCUGCgUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 105099 0.68 0.894804
Target:  5'- uACAuGCUcGAGGCCGGCGCGG-CUg -3'
miRNA:   3'- cUGUuCGAcCUUCGGCUGCGUCuGGg -5'
29946 5' -55.6 NC_006273.1 + 30660 0.68 0.901134
Target:  5'- cGACGcGCcGGGcggcuuccugcGGCCGGcCGCGGugCCg -3'
miRNA:   3'- -CUGUuCGaCCU-----------UCGGCU-GCGUCugGG- -5'
29946 5' -55.6 NC_006273.1 + 68276 0.68 0.901134
Target:  5'- aGAUcAGC---AGGCCGACGCGG-CCCg -3'
miRNA:   3'- -CUGuUCGaccUUCGGCUGCGUCuGGG- -5'
29946 5' -55.6 NC_006273.1 + 177247 0.68 0.901134
Target:  5'- cGugGuGC-GGAGGCCGcuGCGCGuGCCCg -3'
miRNA:   3'- -CugUuCGaCCUUCGGC--UGCGUcUGGG- -5'
29946 5' -55.6 NC_006273.1 + 133483 0.68 0.894804
Target:  5'- uGCAGGCgcGGAcGCUGGCGgCGG-CCCg -3'
miRNA:   3'- cUGUUCGa-CCUuCGGCUGC-GUCuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.