Results 21 - 40 of 158 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29946 | 5' | -55.6 | NC_006273.1 | + | 116694 | 0.71 | 0.794347 |
Target: 5'- -cCGAGCUGGuu-UCG-CGCGGGCCCg -3' miRNA: 3'- cuGUUCGACCuucGGCuGCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 68363 | 0.71 | 0.794347 |
Target: 5'- cGACGAGCaGcuGAGCaCGGCGCAGaACCUg -3' miRNA: 3'- -CUGUUCGaCc-UUCG-GCUGCGUC-UGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 197176 | 0.71 | 0.785437 |
Target: 5'- gGACGAGCUGGgcGCCGuguuCGgGuacuGCCCg -3' miRNA: 3'- -CUGUUCGACCuuCGGCu---GCgUc---UGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 168345 | 0.71 | 0.785437 |
Target: 5'- aAUGAGCUGGucGCCcuGAUGCAGAUgCa -3' miRNA: 3'- cUGUUCGACCuuCGG--CUGCGUCUGgG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 113334 | 0.71 | 0.785437 |
Target: 5'- cGGCAAGCUGGGucgCGACGU--GCCCg -3' miRNA: 3'- -CUGUUCGACCUucgGCUGCGucUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 38605 | 0.71 | 0.776396 |
Target: 5'- cACAGacGCUGGuucagguGCCGACGCAcGGCCg -3' miRNA: 3'- cUGUU--CGACCuu-----CGGCUGCGU-CUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 210383 | 0.71 | 0.785437 |
Target: 5'- gGACcuGCUGcGAaaaguGGCCGGCGaagauaAGGCCCa -3' miRNA: 3'- -CUGuuCGAC-CU-----UCGGCUGCg-----UCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 233498 | 0.71 | 0.776396 |
Target: 5'- cACAGacGCUGGuucagguGCCGACGCAcGGCCg -3' miRNA: 3'- cUGUU--CGACCuu-----CGGCUGCGU-CUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 213952 | 0.71 | 0.803117 |
Target: 5'- -gUAAGCUGGAAGgCGACGaGGACg- -3' miRNA: 3'- cuGUUCGACCUUCgGCUGCgUCUGgg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 148707 | 0.71 | 0.803117 |
Target: 5'- cGGCAAGCUGGAGGUgGAacccUGCGcGCUCu -3' miRNA: 3'- -CUGUUCGACCUUCGgCU----GCGUcUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 5617 | 0.71 | 0.757019 |
Target: 5'- cGGCAAGUugcgcggUGGggGCgUGcccCGCAGACCCc -3' miRNA: 3'- -CUGUUCG-------ACCuuCG-GCu--GCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 70834 | 0.71 | 0.785437 |
Target: 5'- cGGCAcGCUGGcGGGCCGAcCGCcgcGCCCu -3' miRNA: 3'- -CUGUuCGACC-UUCGGCU-GCGuc-UGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 2283 | 0.71 | 0.785437 |
Target: 5'- gGACGAGCUGGgcGCCGuguuCGgGuacuGCCCg -3' miRNA: 3'- -CUGUUCGACCuuCGGCu---GCgUc---UGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 145003 | 0.71 | 0.806584 |
Target: 5'- cACAGGCUGGuguaucuccagucGUCGGCGCGGcauCCCa -3' miRNA: 3'- cUGUUCGACCuu-----------CGGCUGCGUCu--GGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 28323 | 0.71 | 0.794347 |
Target: 5'- uACuGGCUGGAAcGUCaGCGCcGACCCg -3' miRNA: 3'- cUGuUCGACCUU-CGGcUGCGuCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 135602 | 0.71 | 0.794347 |
Target: 5'- gGGCGAGCUGGAAGagGACGaAGACa- -3' miRNA: 3'- -CUGUUCGACCUUCggCUGCgUCUGgg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 109306 | 0.71 | 0.794347 |
Target: 5'- cGACGAgguggaccGCUGGAuccggcacgcGGCCGGCGUAGAacggCCg -3' miRNA: 3'- -CUGUU--------CGACCU----------UCGGCUGCGUCUg---GG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 81762 | 0.7 | 0.81174 |
Target: 5'- -cCGGGCUGcGAAcGCUGACGCcGGCCa -3' miRNA: 3'- cuGUUCGAC-CUU-CGGCUGCGuCUGGg -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 61979 | 0.7 | 0.836642 |
Target: 5'- uGAC-GGCUuuccaGAAGCUGuuGCAGACCCu -3' miRNA: 3'- -CUGuUCGAc----CUUCGGCugCGUCUGGG- -5' |
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29946 | 5' | -55.6 | NC_006273.1 | + | 130863 | 0.7 | 0.836642 |
Target: 5'- cACAAGCUGucacuGCCG-CGC-GACCCg -3' miRNA: 3'- cUGUUCGACcuu--CGGCuGCGuCUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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