miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29946 5' -55.6 NC_006273.1 + 41719 1.12 0.002882
Target:  5'- aGACAAGCUGGAAGCCGACGCAGACCCa -3'
miRNA:   3'- -CUGUUCGACCUUCGGCUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 149779 0.81 0.285294
Target:  5'- -cCGAGCUGGAAGCCGuguauCGCgAGAUCCu -3'
miRNA:   3'- cuGUUCGACCUUCGGCu----GCG-UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 216691 0.8 0.326579
Target:  5'- uGCAGGCaucgUGGAGGCUGAUGUAGACaCCa -3'
miRNA:   3'- cUGUUCG----ACCUUCGGCUGCGUCUG-GG- -5'
29946 5' -55.6 NC_006273.1 + 131529 0.76 0.493872
Target:  5'- cAUggGCUGGAGGaCCaGGCGguGAUCCg -3'
miRNA:   3'- cUGuuCGACCUUC-GG-CUGCguCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 115198 0.76 0.512766
Target:  5'- cGGCucGCUGGAAGCCGGuCGUcugcgacuccuGGACCUg -3'
miRNA:   3'- -CUGuuCGACCUUCGGCU-GCG-----------UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 111383 0.75 0.54164
Target:  5'- gGACGAGCUGGAcaagcacagcGGCUcacCGCAGACCa -3'
miRNA:   3'- -CUGUUCGACCU----------UCGGcu-GCGUCUGGg -5'
29946 5' -55.6 NC_006273.1 + 147332 0.75 0.580925
Target:  5'- cGACGcguGCUGGAcGCCGACGCccagcgauuaacGGACgCCg -3'
miRNA:   3'- -CUGUu--CGACCUuCGGCUGCG------------UCUG-GG- -5'
29946 5' -55.6 NC_006273.1 + 37139 0.74 0.630764
Target:  5'- gGAgGuGCUGGcGGCCGugGCcuguGGCCCg -3'
miRNA:   3'- -CUgUuCGACCuUCGGCugCGu---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 167149 0.74 0.637763
Target:  5'- aGACGGGCcgcUGGAAGUCGGCGgGcgggggcgugauccGACCCg -3'
miRNA:   3'- -CUGUUCG---ACCUUCGGCUGCgU--------------CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 141114 0.74 0.639763
Target:  5'- aGGCAGGC-GGGAGCgGGCGCagcgugcGGACCg -3'
miRNA:   3'- -CUGUUCGaCCUUCGgCUGCG-------UCUGGg -5'
29946 5' -55.6 NC_006273.1 + 140422 0.73 0.650756
Target:  5'- -cCGAGa-GGGAGCCGcCGCgAGACCCg -3'
miRNA:   3'- cuGUUCgaCCUUCGGCuGCG-UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 21666 0.73 0.700348
Target:  5'- cACGGcGCUGGuGGCCGACGUgcacGACCUg -3'
miRNA:   3'- cUGUU-CGACCuUCGGCUGCGu---CUGGG- -5'
29946 5' -55.6 NC_006273.1 + 140779 0.73 0.700348
Target:  5'- cGGCGGGUggaccgGGAAGCCGGCGgAGGuCgCCg -3'
miRNA:   3'- -CUGUUCGa-----CCUUCGGCUGCgUCU-G-GG- -5'
29946 5' -55.6 NC_006273.1 + 73544 0.72 0.71889
Target:  5'- cGACGAcucacguGCUccuccaGAGGCCGACGCgcGGACCCu -3'
miRNA:   3'- -CUGUU-------CGAc-----CUUCGGCUGCG--UCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 118619 0.72 0.71986
Target:  5'- cGCcGGCUGGAgagcgagaGGCCGGCGUAGcuGCCg -3'
miRNA:   3'- cUGuUCGACCU--------UCGGCUGCGUC--UGGg -5'
29946 5' -55.6 NC_006273.1 + 3672 0.72 0.729512
Target:  5'- cGAUcAGC-GGcauGCCGACGCcGACCCg -3'
miRNA:   3'- -CUGuUCGaCCuu-CGGCUGCGuCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 113484 0.72 0.729512
Target:  5'- cGACcuGCUGGGuucggaugccguAGCCGGCGgCGGguuGCCCg -3'
miRNA:   3'- -CUGuuCGACCU------------UCGGCUGC-GUC---UGGG- -5'
29946 5' -55.6 NC_006273.1 + 123473 0.72 0.739084
Target:  5'- --aGGGCgcccuuGAGCUGGCGCAGGCCCu -3'
miRNA:   3'- cugUUCGacc---UUCGGCUGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 145895 0.72 0.748567
Target:  5'- cGACGAGgUGGcGGgCGccACGCAGGCCUu -3'
miRNA:   3'- -CUGUUCgACCuUCgGC--UGCGUCUGGG- -5'
29946 5' -55.6 NC_006273.1 + 145684 0.72 0.748567
Target:  5'- cGCAuGCUGGgcGCUaGCGUGGACCUa -3'
miRNA:   3'- cUGUuCGACCuuCGGcUGCGUCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.